Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2389 116 5e-21 seq4556 84.2 3e-11 >seq2389 Length=30206 Score = 116 bits (128), Expect = 5e-21 Identities = 510/802 (64%), Gaps = 19/802 (2%) Strand=Plus/Plus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 || || || | |||||||||||| | || || |||||||| |||||||| | ||| Sbjct 12458 GTATATTCGACAATTTCCGTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGCTGA 12517 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || |||| | ||||| |||||||||||||||||| |||| | || || || ||||| Sbjct 12518 TTGCTCTTTCTATTACAAGCATCCTTGTAGAGCATAAATGGATTACCGGTTTCAGTTTGT 12577 Query 116593 GACTTGAGAATAGCCTTCCAT-ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 116651 | | | ||||| | |||| || | | | || | || | | ||||| | || Sbjct 12578 GCTTCCAAGATAGCATACCATAACTTTTGTGCCT---TAATTGTC--TCTCTCGCTCTTC 12632 Query 116652 CTCC----TCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCC 116707 || | || || || || || ||| ||||||| |||||| | | ||| | | Sbjct 12633 CTTCGCGTTCATAGCTTTCATAAAGAGCCACAAACTCATCACCCCAAACATCTTGCAAAC 12692 Query 116708 CTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 116767 | ||||| | || ||||| ||||||||||| | ||||| |||| || || | ||||| Sbjct 12693 CAGGTGCTTCATTAGGACAAAAGAGAGACCAATCTCCACCGTCCTTGACACGTTGCATGA 12752 Query 116768 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 116827 |||| || || | ||| || || | || | ||| || | ||| || | || Sbjct 12753 AGAGATCGGGTACCCAAAGGGCATAAAACAAATCACGGGCTCTGATTTCATCCTTACCAA 12812 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 || | || || |||||| | |||||| || ||||| || || || |||| | Sbjct 12813 AGTTCTTTCTTAAATCTAAAAAGGTAAAGATATCAGCATGCCATGGCTCGAGATACATGG 12872 Query 116888 CGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAA 116941 | | | | ||| |||| || | || | ||||| | || || || | Sbjct 12873 C-AAAGGCTCCT--GGACGCTTGTTGCCGCCTTGATCGACATAACGTGCTGTGTTATTGA 12929 Query 116942 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACT 117001 |||| || | ||| |||| | ||| | || | |||||||| || |||| || Sbjct 12930 ATACACGCAACATGGGAAGCAAACCGTTCGAATAACCATTTGTACCGGCAATATAGGATC 12989 Query 117002 TGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTG 117061 ||||| | | || || |||| | ||| ||||| ||||| || || ||||| | Sbjct 12990 CATTGGCACGAATATTATGAATGTTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGG 13049 Query 117062 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 117121 | || | | | | ||||| || || || || || |||| | | || | || Sbjct 13050 CACAGATTTTTAATGTTTCATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGA 13109 Query 117122 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 117181 |||| ||||| || || | |||||||| || ||||| | || || | || || Sbjct 13110 AGCAAGAGGACATCTGAGGACGAGGTGTACCGGCATTGAACAAAGTAGGACTGGCATGAG 13169 Query 117182 TGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGT 117241 | || | | ||||||| | ||| ||||| | ||| | ||| ||||| |||| Sbjct 13170 TAAAGAATTTCTCGGACATCAAGTTGTAAGTCTCGATTGCAGCGTCAATATCTTCACCGT 13229 Query 117242 GAATACCGATTGAGACCCGCAT 117263 | ||||| || | ||| ||||| Sbjct 13230 GGATACCAATGGCGACACGCAT 13251 >seq4556 Length=51470 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||| || ||||| |||| | |||||| ||| || ||| Sbjct 9875 GCAAAGTCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCG 9934 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||| || ||||| ||||| || || | ||||||||||| |||||||| Sbjct 9935 GGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATG 9994 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || ||| || || || | ||||| || |||||||| Sbjct 9995 CCTTCGACAGCGGCAAAGGCGACCAGACGTTCAGCAAAGGA 10035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613472184076560