Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1352 120 3e-22 seq2614 118 1e-21 seq3863 89.7 5e-13 seq2553 89.7 5e-13 >seq1352 Length=65141 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || ||||| || || ||||| |||||||| | || ||||| || Sbjct 16437 AAAATGCAAATCTTTGTTAAAACACTTACTGGCAAGACCATCACTTTGGAGGTCGAATCC 16378 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || ||| | | ||||| | || ||||||||| ||||| || || || || | || Sbjct 16377 TCTGATAGCATCGAAAACG-TCAAGCAAAAAATCCAAGACAAGGAAGGTATCCCTCCTGA 16319 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || | || | || || || ||||| || || | |||||||| ||||| Sbjct 16318 TCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTA 16259 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||||||| | || || || ||||| || ||| Sbjct 16258 CAACATTCAAAAGGAATCTACTCTCCACTTGGTTCTCCGT 16219 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || |||||||| | || |||||| | | Sbjct 15750 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCT 15691 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || ||| | | | | || |||| || | || || ||||| ||||| | || || Sbjct 15690 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAG 15631 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| ||| || ||||| |||| |||| ||||| | | ||||||||| Sbjct 15630 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAAC 15571 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 15570 ATCCAAAAGGAATCCACTCTCCACTTGGTTCTCCGT 15535 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || |||||||| | || |||||| | | Sbjct 16206 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCT 16147 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || ||| | | | | || |||| || | || || ||||| ||||| | || || Sbjct 16146 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAG 16087 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| ||| || ||||| |||| |||| ||||| | | ||||||||| Sbjct 16086 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAAC 16027 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 16026 ATCCAAAAGGAATCCACTCTCCACTTGGTTCTCCGT 15991 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | || |||||| | | Sbjct 15294 ATGCAAATTTTCGTCAAGACTCTCACTGGTAAGACCATTACTTTGGAAGTCGAGTCTTCT 15235 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || ||| | | | | || |||| || | || || ||||||||||| | || ||| Sbjct 15234 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCAA 15175 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || ||||| |||| |||| || || | | |||||||| Sbjct 15174 CAGCGTTTGATCTTTGCTGGTAAACAATTGGAAGACGGTCGTACTTTGAGTGACTACAAT 15115 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||| | || || || ||||| || ||| Sbjct 15114 ATTCAAAAGGAATCCACCCTTCACTTGGTTCTCCGT 15079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || ||||||||||| | || || ||| | | Sbjct 15522 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15463 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || || | | | | || |||| || | ||||| ||||| ||||| | || ||| Sbjct 15462 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15403 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || ||||| || || | |||||||| ||||| ||| Sbjct 15402 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15343 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||| | || || || ||||| || ||| Sbjct 15342 ATTCAAAAGGAATCTACTCTCCACTTGGTTCTCCGT 15307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || ||||||||||| | || || ||| | | Sbjct 15978 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15919 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || || | | | | || |||| || | ||||| ||||| ||||| | || ||| Sbjct 15918 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15859 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || ||||| || || | |||||||| ||||| ||| Sbjct 15858 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15799 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||| | || || || ||||| || ||| Sbjct 15798 ATTCAAAAGGAATCTACTCTCCACTTGGTTCTCCGT 15763 >seq2614 Length=127402 Score = 118 bits (130), Expect = 1e-21 Identities = 164/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 ||| ||| |||||||| || ||||| || || || || || || ||||| | || |||| Sbjct 58721 TTATAAACATGCAAATCTTTGTAAAGACCCTTACAGGAAAGACTATCACTTTAGAAGTCG 58780 Query 38296 AGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCC 38353 | | | || ||| | | ||| | ||||| |||| |||| ||||| || || ||||| Sbjct 58781 AATCTTCTGATAGCATCGAAAATG--TAAAGCAAAAGATCCAAGACAAGGAAGGTATTCC 58838 Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 | |||||||| || ||||||| || || ||||| || || || | || ||||| Sbjct 58839 TCCAGACCAACAACGTCTCATTTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTTTC 58898 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| ||||||||| | || || || ||||| || ||| Sbjct 58899 AGACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCCGT 58944 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || ||||||||||| | || || ||| | | Sbjct 59185 ATGCAGATTTTCGTCAAAACCCTTACTGGTAAAACCATCACTTTAGAAGTTGAGTCTTCT 59244 Query 38304 GACAG-CGTGCAAACGCTTAAAG-AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || || || ||| | ||||| |||| || | ||||| || || ||||| | |||| Sbjct 59245 GATAGTATTGAAAATG--TAAAGCAAAAGATTCAAGACAAGGAAGGGATTCCTCCTGACC 59302 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | || | || || ||||| | || || | || ||||| ||||||| Sbjct 59303 AACAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGCCGTACCCTTTCAGACTACA 59362 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| ||| | || || || ||||| || ||| | | ||||| Sbjct 59363 ACATTCAAAAAGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGCGG 59411 >seq3863 Length=144211 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 |||| || | ||||| || || ||||| | || ||||| || ||||||| ||| || | Sbjct 120094 AAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAACGTCTCATTTTCGCCGGTA 120035 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 |||| |||| || | |||||| | | ||||||||||| ||||||||| | || || | Sbjct 120034 AACAATTGGAAGATGGTCGCACCTTGAGTGACTACAACATTCAAAAGGAATCTACTCTTC 119975 Query 38446 ATTTGGTGCTGCGT 38459 | ||||| || ||| Sbjct 119974 ACTTGGTTCTCCGT 119961 >seq2553 Length=14598 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 |||| || | ||||| || || ||||| | |||||||| || ||||||| ||| || | Sbjct 8077 AAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTCATTTTCGCCGGTA 8136 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 |||| | || |||| || || | | |||||||||||| ||||||||| | || || | Sbjct 8137 AACAATTAGAAGACGGTCGTACTTTGAGCGACTACAACATTCAAAAGGAATCCACCCTTC 8196 Query 38446 ATTTGGTGCTGCGT 38459 | ||||| || ||| Sbjct 8197 ACTTGGTTCTCCGT 8210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500144252637440