Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2389 188 9e-43 seq2614 93.3 5e-14 >seq2389 Length=30206 Score = 188 bits (208), Expect = 9e-43 Identities = 587/902 (65%), Gaps = 14/902 (2%) Strand=Plus/Minus Query 111625 TCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACG 111684 ||||||| ||||| || |||||||| || ||||||||||| ||| | ||||| ||| Sbjct 13253 TCATGCGTGTCGCCATTGGTATCCACGGTGAAGATATTGACGCTGCAATCGAGACTTACA 13194 Query 111685 ACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACA 111743 || ||||||| | | || || | || || | || || | ||||| || |||||| Sbjct 13193 ACTTGATGTCC-GAGAAATTCTTTACTCATGCCAGTCCTACTTTGTTCAATGCCGGTACA 13135 Query 111744 CCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGC 111803 || | || || |||||| ||| ||| | | | | ||||| |||||||| | ||| Sbjct 13134 CCTCGTCCTCAGATGTCCTCTTGCTTCTTGCTCACCATGAAGGAAGATTCAATTGAAGGC 13075 Query 111804 ATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATG 111863 || || | || | | ||||||||||| || || || ||||||||||| | Sbjct 13074 ATCTATGAAACATTAAAAATCTGTGCCCAAATTTCGAAAACTGCAGGTGGTATCGGTCTC 13015 Query 111864 CACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGAT 111923 |||| ||| || | | ||||| || |||| |||||||||||| | || | Sbjct 13014 AACATTCATAATATTCGTGCCAATGGATCCTATATTGCCGGTACAAATGGTTATTCGAAC 12955 Query 111924 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGG- 111982 ||| | |||| ||| | || ||||| || |||||| || ||||| | |||| || Sbjct 12954 GGTTTGCTTCCCATGTTGCGTGTATTCAATAACACAGCACGTTATGTCGATCAAGGCGGC 12895 Query 111983 -----GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATG 112037 ||||| || ||| | | || | ||||| ||||||||||| || |||||| | Sbjct 12894 AACAAGCGTC-CA--GGAGCCTTTGCCATGTATCTCGAGCCATGGCATGCTGATATCTTT 12838 Query 112038 GAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTC 112097 || | || || | ||| ||| | || || | ||| ||| | || Sbjct 12837 ACCTTTTTAGATTTAAGAAAGAACTTTGGTAAGGATGAAATCAGAGCCCGTGATTTGTTT 12778 Query 112098 TCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCT 112157 | || || ||| | || |||||||||||| | | || |||| |||| |||||||| Sbjct 12777 TATGCCCTTTGGGTACCCGATCTCTTCATGCAACGTGTCAAGGACGGTGGAGATTGGTCT 12718 Query 112158 CTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCC 112217 ||||||||||| | | ||||| ||| | |||| |||||| ||||||| || Sbjct 12717 CTCTTTTGTCCTAATGAAGCACCTGGTTTGCAAGATGTTTGGGGTGATGAGTTTGTGGCT 12658 Query 112218 CTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTG 112277 || || || || || ||| | | |||| | ||| | || | | Sbjct 12657 CTTTATGAAAGCTATGAACGCGAAGGAAGAGCGAGAGAGACAATTAAGGCACAAAAGTTA 12598 Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | ||||| | | | ||||| || || |||| |||| |||||| ||||| || Sbjct 12597 TGGTATGCTATCTTGGAAGCACAAACTGAAACCGGTAATCCATTTATGCTCTACAAGGAT 12538 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 || ||||| |||||| ||||| | || |||||| || || || ||||| ||| Sbjct 12537 GCTTGTAATAGAAAGAGCAATCAGCAAAACTTGGGTACCATTAAATGTAGTAACCTTTGT 12478 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 112457 || ||||| | |||| |||| ||||| ||||| |||||| | || || || Sbjct 12477 ACGGAAATTGTCGAATATACAAGTCCCGATGAAGTTGCTGTTTGTAACTTGGCTTCTATT 12418 Query 112458 GCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAA 112517 ||| | |||| | ||| ||| | ||| || | | |||| | | |||||||||| Sbjct 12417 GCTTTACCCACTTTTGT-AATCAACAGAGAA--TCTTACGATTTCAAGAGACTCCACGAA 12361 Query 112518 GT 112519 || Sbjct 12360 GT 12359 Score = 86.0 bits (94), Expect = 8e-12 Identities = 264/401 (66%), Gaps = 8/401 (2%) Strand=Plus/Minus Query 112592 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 ||| || | |||||| ||||| || ||| | ||||||||||| | || || |||||| Sbjct 12225 ATCAAACAAGAGACATCGTCCTATCGGTTTAGGTGTCCAAGGATTAGCCGACACATTCAT 12166 Query 112652 TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGA 112711 | || || | ||||| || ||||| || || | ||| | || ||||| Sbjct 12165 GGCCTTACGTTACCCCTTTGACTCTCCTGAAGCCAAACAATTAAATATTCAAATCTTTGA 12106 Query 112712 GACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATA 112771 || || |||||||| || | || || | || ||||| || | || || || Sbjct 12105 AACCATCTATCACGCTGCCTTGGAAGCCTCATGCGAATTGGCTGAAAAGTACGGACCTTA 12046 Query 112772 TGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAG 112830 |||||| | ||||||| ||| | || |||||| | | |||| || |||| |||| Sbjct 12045 TGAAACTTATGAGGGTAGTCCTGTATC-CAAGGGCATATTACAATACGACATGT-GGAAT 11988 Query 112831 GTGAGACCAAGCT-TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGT 112889 |||| || | || || | ||||||| | || |||||| || || | || Sbjct 11987 GTGACTCCCACCTCTCTTTGGGACTGGGCTTCACTAAAGGAAAAGATAGCCAAGCATGGC 11928 Query 112890 CTTCGTAA--CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGG 112947 | || || || |||| | | || || ||||| || || |||||| | ||||| |||| Sbjct 11927 GTCCGCAATTCACTCTTAT--TAGCCCCTATGCCTACCGCTTCCACCTCTCAAATGTTGG 11870 Query 112948 GTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 || ||||| |||||||| || ||||| | ||| | ||| Sbjct 11869 GTTTCAATGAGTGCTTTGAGCCTTACACTTCCAACTTTTAT 11829 >seq2614 Length=127402 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/294 (68%), Gaps = 14/294 (5%) Strand=Plus/Plus Query 176732 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 176791 |||||||||||||| ||||| || | ||| ||| ||||||||||| | |||||||| Sbjct 43743 AGACCCTTGATGTGAGAACCATCATGATCCTGATCAGTCATGATCATCAAGCGACCATAT 43802 Query 176792 CGAAGCTCGGAAACATCTTG-ATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAG 176850 | ||||||| |||| |||| ||| | ||||| ||||| ||||| | ||| ||||| Sbjct 43803 CTAAGCTCGTCAACA-CTTGTATATTTTTTACCATGTTGGAGACCAAGGATGGCCTTGAT 43861 Query 176851 ATCGTTGAACTCTTGGTT-----TGATGTGAGCTGTGTGACAGAGGCATCACGAACATTC 176905 | || | |||| || | || | ||| | ||| |||||||| ||||| Sbjct 43862 ACTCTTAATTTCTTCATTCTTCATAATTTCAGCATT-----AGAAGCATCACGGACATTG 43916 Query 176906 TTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACC- 176964 || ||||||| || |||||||| | | ||| || ||| ||||| | ||| Sbjct 43917 AGCAGTTTACCACGAATGGGAAAGACACCCCAATAATCACGTTTAACAACAGACAAACCA 43976 Query 176965 CGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTT 177018 | ||| | |||| ||| || ||||| || || || | || | ||||| || Sbjct 43977 CTCAA-AACAAGCGCTTTGGCTGAATCTCCTTCAGTAATAATCAAGGTACATTT 44029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620706971127520