Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2389 197 2e-45 seq2614 95.1 1e-14 >seq2389 Length=30206 Score = 197 bits (218), Expect = 2e-45 Identities = 555/843 (66%), Gaps = 17/843 (2%) Strand=Plus/Plus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || || || ||||| || |||||||| ||||| | ||| || || | |||||| Sbjct 12416 GCAATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGACTTGTATATTCGACAATTTCC 12475 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 ||||| | ||| || ||||| || ||||| || | || || |||||| | || || Sbjct 12476 GTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGCTGATTGCTCTTTCTATTACAA 12535 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 ||||||||||||||||| | || | || || || || |||| | | || || | | Sbjct 12536 GCATCCTTGTAGAGCATAAATGGATTACCGGTTTCAGTTTGTGCTTCCAAGATAGCATAC 12595 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCG-TCCCTCCGCCT-CGTACTTTGTG 106699 || | | | | | || || | || | | | | | ||| ||| | | || || Sbjct 12596 CATAACTTTTGTGCCT--TA-ATTGTCTCTCTCGCTCTTCCTTCGCGTTCATAGCTTTCA 12652 Query 106700 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 106759 || || || ||||||| |||||| | || | ||| ||||| | | ||||| Sbjct 12653 TAAAGAGCCACAAACTCATCACCCCAAACATCTTGCAAACCAGGTGCTTCATTAGGACAA 12712 Query 106760 AAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 106819 || |||||||| | ||||| |||| || || | |||||| || || || | ||| ||| Sbjct 12713 AAGAGAGACCAATCTCCACCGTCCTTGACACGTTGCATGAAGAGATCGGGTACCCAAAGG 12772 Query 106820 GATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 106878 | |||| | ||| | | | || || || | ||| ||| || ||| || | Sbjct 12773 GCATAAAACAAATCACGGGCTCTGATT-TCATCCTTACCAAAGTTCTTTCTTAAATCTAA 12831 Query 106879 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 106938 || | |||||| || ||||||||||| ||||| | || | | ||| | |||| Sbjct 12832 AAAGGTAAAGATATCAGCATGCCATGGCTCGAGATACATGGCAAAGGCTCC---TGGACG 12888 Query 106939 C------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 | || |||||| ||||| || |||||| || ||||| || | ||| |||| Sbjct 12889 CTTGTTGCCGCCTTGATCGACATAACGTGCTGTGTTATTGAATACACGCAACATGGGAAG 12948 Query 106993 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 107052 | ||| | || | ||||||||| || |||| ||| |||||| | | || ||| Sbjct 12949 CAAACCGTTCGAATAACCATTTGTACCGGCAATATAGGATCCATTGGCACGAATATTATG 13008 Query 107053 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 107112 |||| | || ||||| || || || || ||||| ||||| | | ||| | Sbjct 13009 AATGTTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTTAATGTTTC 13068 Query 107113 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 107172 |||||| || | ||||| || ||||| ||| || | ||||||| ||||||||| || Sbjct 13069 ATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGACATCTGAGG 13128 Query 107173 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 107232 | |||||||| |||||||| | || || | || ||| | || | | |||||| Sbjct 13129 ACGAGGTGTACCGGCATTGAACAAAGTAGGACTGGCATGAGTAAAGAATTTCTCGGACAT 13188 Query 107233 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACG 107292 | || ||| ||||| | ||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 13189 CAAGTTGTAAGTCTCGATTGCAGCGTCAATATCTTCACCGTGGATACCAATGGCGACACG 13248 Query 107293 CAT 107295 ||| Sbjct 13249 CAT 13251 >seq2614 Length=127402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 169182 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 169241 ||||||||||||||||||||||||| ||| ||| ||||| ||||| | |||||||| Sbjct 43743 AGACCCTTGATGTGAGAACCATCATGATCCTGATCAGTCATGATCATCAAGCGACCATAT 43802 Query 169242 CGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAG 169300 | ||| || |||| |||| || | ||| || ||||| ||||| | ||| ||||| Sbjct 43803 CTAAGCTCGTCAACA-CTTGTATATTTTTTACCATGTTGGAGACCAAGGATGGCCTTGAT 43861 Query 169301 ATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACA 169360 | || | |||| || | | | || ||||| || |||||||| Sbjct 43862 ACTCTTAATTTCTTCATTCTTCATAATTTCAGCATTAGAAGCATCACGGACATTGAGCAG 43921 Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGAC 169420 || ||||| | |||||||| || | | ||||||| ||| || || | ||| | Sbjct 43922 TTTACCACGAATGGGAAAGACACCCCAATAATCACGTTTAACAACAGACAAACCACTCAA 43981 Query 169421 CGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTT 169469 |||| | ||| |||||||| || || || | ||| | |||||| ||| Sbjct 43982 AACAAGCGCTTTGGCTGAATCTCCTTCAGTAATAATCAAGGTACATTTT 44030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589947126845840