Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3946 280 2e-70 seq2389 259 5e-64 seq4556 129 7e-25 seq2429 87.8 2e-12 >seq3946 Length=52427 Score = 280 bits (310), Expect = 2e-70 Identities = 636/957 (66%), Gaps = 71/957 (7%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCAT 18668 |||||||||| ||||||| | ||| ||||| || || || ||| || || Sbjct 25968 TTAAAAATCAGCATCCAATGTAAATTTTTTCTCCACAGGAGTCTTGTTCATGACACCAGC 26027 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 |||||| || | ||| | |||||||| || || || ||||| | | ||| || || Sbjct 26028 ACGTTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAAT-CA 26086 Query 18729 T-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 | |||||||| ||||| ||||| || | |||| ||||| | ||| || | | | | Sbjct 26087 TATCCATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCA 26146 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 || | ||| || || |||| ||| ||| ||||| | | ||||||| || || | Sbjct 26147 TAAGACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCA 26206 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 || |||||||| |||||| || | ||||||||||| || ||| || || ||||| Sbjct 26207 ATGCAACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAA 26266 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 || || | | || |||| | | ||| ||| |||||| | ||| || | Sbjct 26267 TATCCTTCACACGTTGTTGGCTAGGTTGTTTACGAATATGAGTAAACAAAAGACAAGCGA 26326 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 |||| ||| || || ||||| | || |||||||||||| ||| || ||||| |||| Sbjct 26327 AATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCA 26386 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| || | ||| || | ||| || |||||||||||||| || |||||||||||||||| Sbjct 26387 TCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTT 26446 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 ||||||| ||||||||||| || | || || | | ||||||| | |||||||| Sbjct 26447 CTACTGCAGCAAAAGCAACAAGACGCTCAGCAAA---GGAATCATTAGCAGAAATCCATT 26503 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGT----------------CTCT 19191 | | ||||| |||||||| || | ||| || | | | || | Sbjct 26504 TGAAAGCCCAGTCAGCCTTACGCTTAATACAGGGAACTATAAGAAAACGGGTTATGCTTT 26563 Query 19192 ATAGAATTAAATAGATACA------TACGCTCATCTGTATCTTTAACA------------ 19233 || || |||| ||| | | | |||| | |||||| || || Sbjct 26564 TTATAAATAAAAAGAGAGAAAAAGCTGCGCTTACTTGTATCAATAGCAGAGAAAAGCATT 26623 Query 19234 ------TATGCATC--------------TATCAAT----AAACTGTACATTTCTGAATGA 19269 | | |||| ||||||| | |||||| ||||||| ||| Sbjct 26624 TCTTTTTCTTCATCATCTTTTATATAGGTATCAATCAAAAGACTGTATGTTTCTGAGTGA 26683 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 |||||||| || || ||||| || ||||||||| | ||||| | || | |||||| Sbjct 26684 ATATTTTCAATCATGATTTGAAAGCCATAAAAACATTTAGCTTCAGGAATTTTGACTTCA 26743 Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT-GCAAAAAATGC 19388 |||||| ||| |||||||||||||| || || |||||| |||| ||||| || || Sbjct 26744 TCACAAAAGTTTTGCACCAAATTTTCATTTACAATACCATCA-GAGCTGGCAAAGAAAGC 26802 Query 19389 TAATACATGTTTAATAAAATGTTTTTCA-TCTGAG-GTTAATGTATT-CCAATCATTAAT 19445 || || | ||||||| | ||| ||| || | ||| || ||||||||| Sbjct 26803 CAAAACGCGAGAAATAAAAAATCGCTCATTCTCAGTCATTTTGTTTTCCCAATCATTTTG 26862 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 |||| || |||||||| ||||||| ||||||||||||| || ||||| || ||||| Sbjct 26863 ATCTCTACTTAAATCTATTTCTTCAGCTGTCCAAAAAGATGCTTCTGCCTTCTTATA 26919 >seq2389 Length=30206 Score = 259 bits (286), Expect = 5e-64 Identities = 637/960 (66%), Gaps = 8/960 (1%) Strand=Plus/Plus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 || ||||| || | ||||| ||||| || |||| ||| | ||||||| | ||||| Sbjct 12416 GCAATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGACTTGTATATTCGACAATTTCC 12475 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 | ||| || |||| |||||| || |||||||| ||||| ||||| | | ||||| Sbjct 12476 GTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGCTGATTGCTCTTTCTATTACAA 12535 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || |||||||| |||||||| || | || ||||| | || | ||| | ||||| | | Sbjct 12536 GCATCCTTGTAGAGCATAAATGGATTACCGGTTTCAGTTTGTGCTTCCAAGATAGCATAC 12595 Query 48060 CA-AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTA--TTTAGTA 48116 || ||| | | ||||| || |||| ||| | || |||| || ||| || Sbjct 12596 CATAACTTTTGT-GCCTTAATTGTCTCTCTCGCTCTTCCTTCGCGTTCATAGCTTTCATA 12654 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 | | | | |||| ||||| || | |||| | || ||||| |||||||||||| Sbjct 12655 AAGAGC--CACAAACTCATCACCCCAAACATCTTGCAAACCAGGTGCTTCATTAGGACAA 12712 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | | |||||||| || | | || || | ||| || | ||| |||| |||||| Sbjct 12713 AAGAGAGACCAATCTCCACCGTCCTTGACACGTTGCATGAAGAGATCGGGTACCCAAAGG 12772 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| | | ||| | ||| || || ||| ||| || | | || | | Sbjct 12773 GCATAAAACAAATCACGGGCTCTGATTTCATCCTTACCAAAGTTCTTTCTTAAATCTAAA 12832 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 ||| | ||||||||||||||||| || | ||| || || | | ||||| || || Sbjct 12833 AAGGTAAAGATATCAGCATGCCATGGCTCGAGATACATGGCAAAGGCTCCTGGACGCTTG 12892 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || || |||||||| | ||| | || || || || | || | ||||| || | | | Sbjct 12893 TTGCCGCCTTGATCGACATAACGTGCTGTGTTATTGAATACACGCAACATGGGAAGCAAA 12952 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 || || || |||||| || || | |||||| |||| | || | |||||| ||| Sbjct 12953 CCGTTCGAATAACCATTTGTACCGGCAATATAGGATCCATTGGCACGAATATTATGAATG 13012 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | ||| ||||||||||| |||| || ||| | ||||| ||| | || ||||| Sbjct 13013 TTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTTAATGTTTCATAG 13072 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| || ||| || |||| | | | || ||| ||||| || ||| || Sbjct 13073 ATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGACATCTGAGGACGA 13132 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || || | ||| || || || ||| |||||| |||| ||||||| || | ||| Sbjct 13133 GGTGTACCGGCATTGAACAAAGTAGGACTGGCATGAGTAAAGAATTTCTCGGACATCAAG 13192 Query 48657 TTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCAT 48715 || || || || || ||| || ||||| || | || ||||| || | |||||||| Sbjct 13193 TTGTAAGTCTCGATTGCAGCGTCAATATCTTCACCG-TGGATACCAATGGCGACACGCAT 13251 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 | | || |||||| | || | | ||| | || || | ||||| ||| ||| Sbjct 13252 GATAAGATGTTGAGGACGCTCGGCGGTCTTGCCGTCAATCTTGAGTAGATAGGATCGTTC 13311 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 | || || || |||||| |||||||| || || | |||| |||||| | ||| || Sbjct 13312 AAGAGTCTTGAATCCAAAAAAGTTGTATTTGAAATCTCTGTCATAAATAATGGCTGAGTT 13371 Score = 114 bits (126), Expect = 1e-20 Identities = 522/832 (63%), Gaps = 13/832 (2%) Strand=Plus/Plus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || || |||||||| |||| || | || | ||| || |||||||||||||| ||| Sbjct 11446 TCTACTGTAAACTTGATTGCATCAACTGCAGGACGTGTACGCAAATAATACATACCCGTC 11505 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || || || ||| |||||||| |||||||| || | ||| | | | ||||| Sbjct 11506 TTCAATCCCTTTTGCCAACCATAGAAGTGCATACTTGTCAGCTTACCAAAGTTGGGTTCA 11565 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | |||| || || | | |||||| |||||||| | || || | ||||| |||||| Sbjct 11566 GCAATAAAGATGTTCAAACTTTGACTTTGATCAATGTAGGCGCCACGGTCAGCGGCCATA 11625 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 || | ||| | ||| | || ||||| || || || || | | ||| | || || Sbjct 11626 TCAACAATTGTACGTTGAGAAATTTCCCAAACAGTCTTGTAGAGCTCTTTGAGGTGTTGA 11685 Query 47217 GGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgttttttaattca 47273 || | | | |||||||| |||||| || | | || || |||| || | |||| Sbjct 11686 GGAATTGTGGGTACATTTTGAACAGATCCACCATCGGCCATGATCATGTTCTTGACTTCA 11745 Query 47274 tttgaccaaa----gttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 | ||| | | || || | | | | | | ||| || || ||||| Sbjct 11746 TCGTTCCAGATACCCATATCAACCAAATCACGAAGTAACCA----AGGGTTGACCATTTG 11801 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 | |||| || || || || | |||| |||| | || || || || || | | || Sbjct 11802 ATATTCACCCGAGAGCACACGACGGGTATAAAAGTTGGAAGTGTAAGGCTCAAAGCACTC 11861 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 ||| || || ||||||| || || || |||||||| | || | ||| | ||| Sbjct 11862 ATTGAAACCCAACATTTGAGAGGTGGAAGCGGTAGGCATAGGGGCTAATAAGAGTGAATT 11921 Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509 | || |||| || ||||| ||| ||||||||| | || Sbjct 11922 GCGGACGCCATGCTTGGCTATCTTTTCCTTTAGTGAAGCCCAGTCCCAAAGAGAGGTGGG 11981 Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569 | |||||||| | || ||||| | || || || || ||| ||| | ||| || Sbjct 11982 AGTCACATTCCACATGTCGTATTGTAATATGCCCTTGGATACAGGACTACCCTCATAAGT 12041 Query 47570 TTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATAT 47629 || |||||| ||||| || ||| | ||| || |||||||| ||| | ||| || Sbjct 12042 TTCATAAGGTCCGTACTTTTCAGCCAATTCGCATGAGGCTTCCAAGGCAGCGTGATAGAT 12101 Query 47630 TGTTTCAAATATTTTTATGTTTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNN 47688 |||||||| |||| || |||| ||| || ||||| | || ||||| || || Sbjct 12102 GGTTTCAAAGATTTGAATATTTA-ATTGTTTGGCTTCAGGAGAGTCAAAGGGGTAACGTA 12160 Query 47689 NNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTAT 47748 ||||| || || |||||||| ||||| | ||| || || | ||| | || | Sbjct 12161 AGGCCATGAATGTGTCGGCTAATCCTTGGACACCTAAACCGATAGGACGATGTCTCTTGT 12220 Query 47749 TAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800 | || || ||||| | || || | ||| ||||| ||||| || || Sbjct 12221 TTGATCTTTCTGCTTCAATGACAGGGTAATAGTTGATATCGATAATCTTGTT 12272 >seq4556 Length=51470 Score = 129 bits (142), Expect = 7e-25 Identities = 371/566 (66%), Gaps = 16/566 (3%) Strand=Plus/Plus Query 18609 TGGTTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAA------TTCATTAC 18662 || |||||||||| ||||||||| || | ||| |||| || ||||| || Sbjct 9517 TGTTTAAAAATCAGCATCCAAAGTGAATG---TCTTTTCAACAGGTGTCTTGTTCATGAC 9573 Query 18663 TCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGA 18722 || |||||| || | ||| | |||||||| || || || || || | | || Sbjct 9574 ACCAGCACGTTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGA 9633 Query 18723 TATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATT 18781 || ||| |||||||| || ||||| || | |||| || || || | |||||| | Sbjct 9634 GAT-CATGTCCATAAAGTCGAATGGGTTAGTAGCATTGTAAATCTTGTCGAATCCAAGAG 9692 Query 18782 CTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTC 18841 | | | || | ||| || || |||| ||||| ||||| | ||||| | Sbjct 9693 CGACCATGAGACGATCAGCGACGAATTCGATATACTGACACATCAAGGTAGCGTTCATAC 9752 Query 18842 CTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTG 18901 | || ||| |||||| || ||||| | || ||||||||||| ||| || || ||| Sbjct 9753 CGATCAATGCAACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACGGCTTCTA 9812 Query 18902 ATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAAC 18961 || || || | | || | | || | | | | || | |||| | || Sbjct 9813 CAATGATGTCCTTGACGCGTTGTTGACTGGGTTGTTTACGGATGTGGGTGAACAAGAGAC 9872 Query 18962 ATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAAC 19021 | ||||| ||| || || || || || | || |||||||||||| ||| || |||| Sbjct 9873 AGGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAAC 9932 Query 19022 CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATA 19081 | ||||||| || | ||| |||||||| || || || || ||||| ||||||||||| | Sbjct 9933 CGGGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGA 9992 Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA- 19140 | ||||| || || ||||| || || || | ||| || || || | |||| Sbjct 9993 TGCCTTCGACAGCGGCAAAGGCGACCAGACGTTCAGCA----AAGGATTCGTTGGATGAG 10048 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTT 19166 |||||||| | |||||||| ||||| Sbjct 10049 ATCCATTTGAAGGCCCAATCTGCCTT 10074 >seq2429 Length=29321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/186 (72%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 47019 AAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT 47078 ||||| ||||| || |||||||| ||| |||| |||||||||||||| ||| || Sbjct 16923 AAATAGTACATGCCCGTCTTTAATCCTTTCTTCCAAGCATAGAAATGCATAGAAGTCAAC 16864 Query 47079 TTAGAATAACTAGGTTCTGAAATATGAATA--TTAAGAGATTGACTCTGATCAATAAATG 47136 || |||| ||||| | | |||||| || | |||||| |||||||||| | | Sbjct 16863 TTTCCGAAACTTGGTTCGGCA--GTGAATAAGTTCATCGATTGAGACTGATCAATATAGG 16806 Query 47137 CACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTAT 47196 |||| | ||||| |||||||| | ||| ||||| | || ||||| || || || | Sbjct 16805 CACCACGGTCAGCCGCCATATCAATAATGGTTCTTTGCGAAATTTCCCACACAGTCTTGT 16746 Query 47197 A-AATT 47201 | |||| Sbjct 16745 ACAATT 16740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562076717640240