Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3946 185 1e-41 seq4556 116 4e-21 >seq3946 Length=52427 Score = 185 bits (204), Expect = 1e-41 Identities = 392/572 (69%), Gaps = 26/572 (5%) Strand=Plus/Plus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATT---CATAACTC 36879 ||| ||||||||| |||| || ||||||||| | ||| | | | || ||| || | Sbjct 25964 TTTCTTAAAAATCAGCATCCAATGTAAATTTTTTCTCCACAGGAGTCTTGTTCATGACAC 26023 Query 36880 CCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATA 36939 | |||||| || ||| || |||| ||||| || |||||||||| ||||| | Sbjct 26024 CAGCACGTTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAA 26083 Query 36940 TATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTA-CTA---CATGATAAT 36995 | | |||||||| ||||| ||||| | || |||| || || | | || || | Sbjct 26084 TCATATCCATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAA 26143 Query 36996 TCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATA 37055 | | ||| | ||| ||||| ||||| ||||||| |||||| | | | || ||| Sbjct 26144 CCAT----AAGACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATA 26199 Query 37056 CCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATC 37114 ||||| | | || || | |||||| | ||||| | || ||| || |||||| || Sbjct 26200 CCAATCAATGCAACAGGTAATGCATCGGTTAAGAATTC-TTGTTCAATGCCTACAGCTTC 26258 Query 37115 TTTAACTATATTAACAATAACTTCTTCAGTTGGGG-GATATTTTA--AATATT--TAAAC 37169 | |||| || | | || || ||||| | | |||| ||||| ||||| Sbjct 26259 CAT---TATAATATCCTTCACACGTT--GTTGGCTAGGTTGTTTACGAATATGAGTAAAC 26313 Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 || | ||| || ||||| ||| | |||||| || | || |||||||||||| ||| Sbjct 26314 AAAAGACAAGCGAAATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAA 26373 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 || || || ||||| ||||| | ||| |||| |||||| || | ||||| || || ||| Sbjct 26374 GTCAAACCGGGCATCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAA 26433 Query 37290 AAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAA 37349 ||||| |||||||| ||||| ||||| || |||||||| | | |||| ||| || | Sbjct 26434 AAGAATATACCTTCTACTGCAGCAAAAGCAACAAGACGCTCAGC-AAAG--GAATCATTA 26490 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTT 37381 ||||||||||||| | ||| || ||||| Sbjct 26491 GCAGAAATCCATTTGAAAGCCCAGTCAGCCTT 26522 Score = 132 bits (146), Expect = 6e-26 Identities = 213/303 (70%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 37399 TTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAA 37458 |||| ||||| || || || | | |||||||||| |||| ||||||| ||||||| Sbjct 26598 TTGTATCAATAGCAGAGAAAAGCATTTCTTTTTCTTCATCATCTTTTATATAGGTATCAA 26657 Query 37459 TTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAAC 37518 | | | ||| || |||| ||||||||||||||||| || ||||| |||||||||| Sbjct 26658 TCAAAAGACTGTATGTTTCTGAGTGAATATTTTCAATCATGATTTGAAAGCCATAAAAAC 26717 Query 37519 ACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTA 37578 | ||||||||| | || || || | | |||| | | | || |||||||| || | Sbjct 26718 ATTTAGCTTCAGGAATTTTGACTTCATCACAAAAGTTTTGCACCAAATTTTCATTTACAA 26777 Query 37579 TCCCATCACTAGCT-GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCA 37634 | |||||| |||| ||||||||||| | ||| |||||| || ||| ||| Sbjct 26778 TACCATCA-GAGCTGGCAAAGAAAGCCAAAACGCGAGAAATAAAAAATCGCTCATTCTCA 26836 Query 37635 TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAA 37694 | | |||| ||||||||| |||| | |||||| | ||| ||| | |||||| Sbjct 26837 GTCATTTTGTTTTCCCAATCATTTTGATCTCTACTTAAATCTATTTCTTCAGCTGTCCAA 26896 Query 37695 AAA 37697 ||| Sbjct 26897 AAA 26899 >seq4556 Length=51470 Score = 116 bits (128), Expect = 4e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 ||||| | ||| ||||| ||| || | ||||||||| | || |||||||||||| | Sbjct 9863 AACAAGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTA 9922 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 ||||| || || ||||| ||||| | ||| || | |||||| || | || || || ||| Sbjct 9923 AAGGTCAAACCGGGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCA 9982 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGT 37328 |||||||| || ||||| || || ||||| || || |||||| Sbjct 9983 GAAAAGAAGATGCCTTCGACAGCGGCAAAGGCGACCAGACGT 10024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592282993518640