Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2600 156 3e-33 seq2841 154 1e-32 seq2614 152 4e-32 seq1352 147 2e-30 seq2577 82.4 6e-11 >seq2600 Length=207564 Score = 156 bits (172), Expect = 3e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||| |||||||||||||| || ||||| || || ||||| ||||||||||| ||||| Sbjct 124526 ATTTCCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATC 124467 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | || | |||| || | ||| || || ||||| || | | |||||||| || Sbjct 124466 GCTTAATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGG 124407 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| |||||||| ||||||||||| ||| ||| | || | || || || | ||| Sbjct 124406 TGGAATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTC 124347 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | |||| |||||||| || | ||| || |||||||| ||||| Sbjct 124346 AACTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCAT 124296 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| ||| | || ||||||||||| || ||||| ||||| ||||| || || | Sbjct 124294 CCACCTCGTAATCTTAGCACTAAATGAAGAGTTGATTCCTTTTGAATATTATAGTCACTG 124235 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||| || || ||||| || | ||| |||||||| || ||| Sbjct 124234 AGAGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATGAGACGTTGTTGATCAGGAGGA 124175 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||| ||||| ||||| | || | | | ||||| | ||| ||| Sbjct 124174 ATACCTTCCTTATCTTGAATCTTTTGCTTTACGTTATCGATACTATCAGAAGATTCAACT 124115 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||| || || | || || ||||| || ||||| Sbjct 124114 TCTAAAGTGATAGTTTTACCAGTAAGGGTCTTGACAAAAATTTGCAT 124068 >seq2841 Length=27215 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| |||||||||||||| || |||||||| || ||||||||||||||||||||||| Sbjct 25429 TTTCCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCA 25488 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | || | | || || | ||| ||||| ||||| || | | ||||||||||| Sbjct 25489 CTTAATGTACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGT 25548 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || |||||||||||||||||||| ||| || | || | || || || | ||| Sbjct 25549 GGGATACCTTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCA 25608 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | |||| || ||||| || | ||| || ||||| || ||||| Sbjct 25609 ACTTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 25658 Score = 140 bits (154), Expect = 3e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 101248 TCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGT 101307 |||||||||||| || || ||||| || ||||||||||||||||||||||| | || Sbjct 25671 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25730 Query 101308 TCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCC 101367 | | || || | ||| ||||| ||||| || | | ||||||||||| || || || Sbjct 25731 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 25790 Query 101368 TTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAG 101427 |||||||||||||||||| ||| || | || | || || || | ||| ||||| | Sbjct 25791 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 25850 Query 101428 AGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || ||||| || | ||| || ||||| || ||||| Sbjct 25851 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 25892 Score = 140 bits (154), Expect = 3e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 101248 TCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGT 101307 |||||||||||| || || ||||| || ||||||||||||||||||||||| | || Sbjct 25905 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25964 Query 101308 TCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCC 101367 | | || || | ||| ||||| ||||| || | | ||||||||||| || || || Sbjct 25965 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 26024 Query 101368 TTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAG 101427 |||||||||||||||||| ||| || | || | || || || | ||| ||||| | Sbjct 26025 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 26084 Query 101428 AGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || ||||| || | ||| || ||||| || ||||| Sbjct 26085 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 26126 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 101248 TCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGT 101307 |||||||||||| || || ||||| || ||||||||||||||||||||||| | || Sbjct 26139 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 26198 Query 101308 TCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCC 101367 | | || || | ||| ||||| ||||| || | | ||||||||||| || || || Sbjct 26199 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 26258 Query 101368 TTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTC 101424 | ||||||||| || ||| ||||| || ||| | ||||| | ||| || || Sbjct 26259 ATGTTTATCTTGGATCAATTGCTTTACGTAATCAACACTATCAGAAGATTCAACGTC 26315 >seq2614 Length=127402 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || ||||||||||| || ||||| || | | || | | |||| || Sbjct 59393 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAAAGGGTACGGCCATCTTCT 59334 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| ||||| |||||||| ||||| || || ||||| ||||| || |||||| Sbjct 59333 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGAGGAATCCCTTCCTTGTCTTGA 59274 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||||| |||||| |||| | | | ||||| | || ||||| | ||||| ||||| Sbjct 59273 ATCTTTTGCTTTACATTTTCAATACTATCAGAAGACTCAACTTCTAAAGTGATGGTTTTA 59214 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| || || |||||||| Sbjct 59213 CCAGTAAGGGTTTTGACGAAAATCTGCAT 59185 >seq1352 Length=65141 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || || |||||||| ||||| || || || || | | || | | | Sbjct 15307 ACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCC 15366 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||||| ||||| ||||||||||||||||| || |||||||| || || Sbjct 15367 ATCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTT 15426 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||| ||||| || ||| | || | | | ||||| | || ||||| | ||||| Sbjct 15427 GTCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGAT 15486 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||| || ||||| || ||||| Sbjct 15487 GGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15522 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || || |||||||| ||||| || || || || | | || | | | Sbjct 15763 ACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCC 15822 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||||| ||||| ||||||||||||||||| || |||||||| || || Sbjct 15823 ATCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTT 15882 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||| ||||| || ||| | || | | | ||||| | || ||||| | ||||| Sbjct 15883 GTCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGAT 15942 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||| || ||||| || ||||| Sbjct 15943 GGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15978 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||| ||||| ||||| |||||||| || | ||| | | Sbjct 15079 ACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTCAAAGTACGACC 15138 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| ||||| ||||| ||||||||||||||||| || ||||| || || || Sbjct 15139 GTCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTCCCTCCTT 15198 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| ||||| || ||| | || | | ||||| | || ||||| | ||| | Sbjct 15199 ATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTAAT 15258 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | ||| || || || || ||||| Sbjct 15259 GGTCTTACCAGTGAGAGTCTTGACGAAAATTTGCAT 15294 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || || || ||||| ||||| || ||||| || | ||| | | Sbjct 15535 ACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACC 15594 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| ||||| || || || | ||| || ||||| || |||||||| || || Sbjct 15595 GTCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTT 15654 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| ||||| || ||| | || | | ||||| | || ||||| | ||||| Sbjct 15655 ATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGAT 15714 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || ||||| || || || || ||||| Sbjct 15715 GGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 15750 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || || || ||||| ||||| || ||||| || | ||| | | Sbjct 15991 ACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACC 16050 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| ||||| || || || | ||| || ||||| || |||||||| || || Sbjct 16051 GTCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTT 16110 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| ||||| || ||| | || | | ||||| | || ||||| | ||||| Sbjct 16111 ATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGAT 16170 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || ||||| || || || || ||||| Sbjct 16171 GGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 16206 >seq2577 Length=30737 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || ||||| || ||||| ||||| || ||||| ||| | ||| | | Sbjct 19785 ACGGAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTACGACC 19844 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 ||| |||||||||||||| ||||| || | ||| ||||| || || ||||| ||| Sbjct 19845 ATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCT 19899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396256347850062