Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1352 116 3e-21 seq2614 102 6e-17 seq2600 82.4 6e-11 >seq1352 Length=65141 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || |||||||| || || || || || | || | || || Sbjct 15314 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCTTCA 15373 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| ||||| |||| ||||||||||| | |||| |||||||||||| | Sbjct 15374 AGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGA 15433 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || ||| | | | || || | ||| || |||| || || ||||| Sbjct 15434 ATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTA 15493 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || |||||||| ||||| Sbjct 15494 CCAGTCAAAGTCTTGACAAAAATTTGCAT 15522 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || |||||||| || || || || || | || | || || Sbjct 15770 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCTTCA 15829 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| ||||| |||| ||||||||||| | |||| |||||||||||| | Sbjct 15830 AGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGA 15889 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || ||| | | | || || | ||| || |||| || || ||||| Sbjct 15890 ATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTA 15949 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || |||||||| ||||| Sbjct 15950 CCAGTCAAAGTCTTGACAAAAATTTGCAT 15978 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || |||||||||||||| ||| | | | ||| |||| ||| Sbjct 15086 ACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTCAAAGTACGACCGTCTTCC 15145 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| |||| ||||||||||| | |||| |||||||| || | Sbjct 15146 AATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTCCCTCCTTATCTTGA 15205 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || ||| | | || || | ||| || |||| ||||| || || Sbjct 15206 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTAATGGTCTTA 15265 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || || ||||| ||||| Sbjct 15266 CCAGTGAGAGTCTTGACGAAAATTTGCAT 15294 >seq2614 Length=127402 Score = 102 bits (112), Expect = 6e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| || || ||| || |||||||| ||||||||| Sbjct 59183 CCGCCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCACTC 59124 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || || | ||||||||| ||||| |||| || || ||||| | ||| Sbjct 59123 AAAGTACGACCATCTTCGAGCTGCTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGA 59064 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCT--GACGCCTCCA 48717 | || |||||||| ||||||||| || || | | || | ||| | || | || | Sbjct 59063 ATACCTTCCTTGTCTTGAATCTTTTGCTTGAC-GTTCTCA-ATACTATCAGAAGATTCGA 59006 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||| ||||| ||||| || || | ||||| || ||||||||||| Sbjct 59005 CTTCCAAGGTAATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCAT 58957 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| || || ||| ||||||||||| ||||| || || Sbjct 59411 CCGCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAA 59352 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || || || ||||| ||||| |||| || ||||| || | ||| Sbjct 59351 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGAGGA 59292 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||||||| |||||| | | | || || | ||| || Sbjct 59291 ATCCCTTCCTTGTCTTGAATCTTTTGCTTTACATTTTCAATACTATCAGAAGACTCAACT 59232 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | ||||| || ||||||||||| Sbjct 59231 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCAT 59185 >seq2600 Length=207564 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||| ||||| || || || ||||||||||| || ||| ||| | ||| | || || Sbjct 124277 CACTAAATGAAGAGTTGATTCCTTTTGAATATTATAGTCACTGAGAGTACGACCATCTTC 124218 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 || || || || ||||| || || || |||||||| | |||| || ||||| || Sbjct 124217 TAATTGTTTGCCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTG 124158 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||||| ||||| | | | | || || | || || || | || || ||||| Sbjct 124157 AATCTTTTGCTTTACGTTATCGATACTATCAGAAGATTCAACTTCTAAAGTGATAGTTTT 124098 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || |||||||| ||||| Sbjct 124097 ACCAGTAAGGGTCTTGACAAAAATTTGCAT 124068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380916401536818