Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2600 105 6e-18 seq1352 89.7 4e-13 seq3464 82.4 6e-11 >seq2600 Length=207564 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || ||||| || || ||| ||| |||| Sbjct 124296 ATGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 124355 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||||| |||||||| || | || ||||||| Sbjct 124356 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 124415 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || |||||||||||||| ||||||||| | |||||| || | | || | |||||||| Sbjct 124416 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAG--CGATTATA 124473 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | || ||||| ||||| || || || |||||||| | ||| |||| || Sbjct 124474 ATATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGG 124522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || |||||||| || || ||| ||| |||| Sbjct 124068 ATGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 124127 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | |||||||| || || || || || | || |||||| Sbjct 124128 GATAGTATCGATAACGTAAAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 124187 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || |||||||| ||||||||||| |||||| | ||| | || ||||| Sbjct 124188 CAACGTCTCATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACTCTCAGTGACTATAAT 124247 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| ||||| || | || ||||||||||||| || || Sbjct 124248 ATTCAAAAGGAATCAACTCTTCATTTAGTGCTAAGATTACGAGGTGGTAT 124297 >seq1352 Length=65141 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || ||||||||||| || ||| || |||| Sbjct 15522 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15463 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || |||||||||| || ||||| ||||| | || |||||| Sbjct 15462 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15403 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| || || || | |||||| || | | || |||||| Sbjct 15402 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15343 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||||||||| ||| |||| Sbjct 15342 ATTCAAAAGGAATCTACTCTCCACTTGGT 15314 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || ||||||||||| || ||| || |||| Sbjct 15978 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15919 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || |||||||||| || ||||| ||||| | || |||||| Sbjct 15918 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15859 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| || || || | |||||| || | | || |||||| Sbjct 15858 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15799 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||||||||| ||| |||| Sbjct 15798 ATTCAAAAGGAATCTACTCTCCACTTGGT 15770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || ||||| |||||||| ||| || |||| Sbjct 15294 ATGCAAATTTTCGTCAAGACTCTCACTGGTAAGACCATTACTTTGGAAGTCGAGTCTTCT 15235 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || |||||||||| || || || |||||| | || |||||| Sbjct 15234 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCAA 15175 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| || |||||||||||||| | ||| || || || || Sbjct 15174 CAGCGTTTGATCTTTGCTGGTAAACAATTGGAAGACGGTCGTACTTTGAGTGACTACAAT 15115 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||| || || ||| |||| Sbjct 15114 ATTCAAAAGGAATCCACCCTTCACTTGGT 15086 >seq3464 Length=64949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 || ||||| | ||||||||||| || || |||||||||||| | ||| || ||| Sbjct 37902 GACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTGAGCGAC 37843 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||||||||| ||||||||||| ||| |||| Sbjct 37842 TACAACATTCAAAAGGAATCTACTCTTCACCTGGT 37808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425381127020514