Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3946 269 4e-67 seq3345 259 6e-64 seq4556 241 2e-58 >seq3946 Length=52427 Score = 269 bits (298), Expect = 4e-67 Identities = 530/771 (69%), Gaps = 17/771 (2%) Strand=Plus/Plus Query 47554 ACCAATTGTTTAAAAGAAGTTTTAGGTTCCCAACCCAATTTTTTCTTTGCCTTAGAGGCA 47613 |||| || | ||||| | ||| ||| ||||||||||| | || ||||| | | | Sbjct 14976 ACCAGTTCATCAAAAGTAACCTTACGTTTCCAACCCAATTCAGTGTTGGCCTTTGTAGGA 15035 Query 47614 TCACCTAATAAGGTCTCTACTTCAGCAGGACGGAAATATTTAGAGTCAATTCTGATAACC 47673 ||||| || || || ||||| |||||||| || ||||| | || || | | | | Sbjct 15036 TCACCCAACAAAAGATCAACTTCGGCAGGACGAAAGTATTTGGGATCGATGCGCACACGC 15095 Query 47674 GTTTTACCA---TCAGAATCAATACCAACTTCATCAAGACCAGAACCTTCCCATCTAATA 47730 ||||| |||| || |||||| |||| | ||| |||||||| |||| Sbjct 15096 ACCTTACCTGTCTCAGCGTCTTTACCAATCTCATTCACACCTTCGCCTTCCCAAACAATA 15155 Query 47731 TTCATATCAAAATAAGGTGCAGATTCCT---CAACAAACTGACGGACAGAATATTGATTT 47787 | | || | ||| | | || ||| ||||||| | |||| || | | Sbjct 15156 GT-ACGTCCAG-TAACCTTAA-ATGCCTTTTCAACAAAACTTCTTACAGTATGTGTTTCA 15212 Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 |||||||| | || ||||| | ||| | |||||| |||||||| | ||||||| |||| Sbjct 15213 CCTGTGGCTAGGACGAAATCTTGAGGCTTTTCTTGCTGAAGCATGAGCCACATACCCTCT 15272 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 ||||| || | ||||||||||| ||||| ||||||| || || ||||| | ||| Sbjct 15273 ACATAGTCACGAGCATGTCCCCAATCACGTTTGGCATCAATGTTACCCAGATAAAGACAA 15332 Query 47908 TCTTGCTTACCTTCAGAGATTG-CTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGT 47966 ||||| || || || | | | || | ||||| ||||| |||||||| || Sbjct 15333 TCTTGACGGCCCA-AGTGAATATCGGCCACAGCACGGGTAATTTTACGGGTTACAAAGGT 15391 Query 47967 TTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTA 48026 |||||| | || ||||| || || ||||| |||||| | || |||||||| |||| Sbjct 15392 ACGACCACGACGAGGTGATTCGTGGTTGAAAAGGATACCATTGCAAGCATACATATCGTA 15451 Query 48027 TGATTCACGATAGTTCTTTACT-ATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAG 48085 || ||||| ||||| | | | |||||||| ||||||||||| |||||||||||||||| Sbjct 15452 GGACTCACGGTAGTT-TACAGTGATCCAGTAGCCATAGAGTTTGGCAACACCATAAGGAG 15510 Query 48086 AACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTT 48145 | || |||||||| || ||||| || | || |||||||| |||||||| ||||||| Sbjct 15511 ATCGAGGATAGAAGGGCGTGGTTTCCTTTTGAGGAGTCTCCACGACCTTACCGTAAAGTT 15570 Query 48146 CACTGGTGGATGCTTGATAGATACGAACCCTATC--TTCCATCTCAAGCAAACGGACTGC 48203 || ||| || ||||| |||| ||| || | || | | | |||| ||||| || Sbjct 15571 CAGAGGTAGAAGCTTGGTAGAAACGGACTCGGTCAGCTAAACCACAAG--TACGGATGGC 15628 Query 48204 CTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAA 48263 || | | | || || || | ||||| | ||||||||| || | ||| ||||| Sbjct 15629 ATCTAATAAACGAAGTGTACCAAGAGCATCGACGTCACCAGTATATTCAGACATGTCAAA 15688 Query 48264 CGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTG 48314 ||||| || |||||| || || |||||||||||| ||| ||||| Sbjct 15689 GGAAACTTTGACATGAGATTGAGCAGCAAGATTATAAACTTCAGTAGGTTG 15739 >seq3345 Length=10527 Score = 259 bits (286), Expect = 6e-64 Identities = 355/494 (72%), Gaps = 4/494 (1%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 ||||| || | ||||| || | ||| | |||||| || ||||| | |||||| | || Sbjct 3622 CCTGTAGCCAAGACAAAGTCTTGAGGCTTTTCTTGCTGGAGCATGAGCCACATGCCTTCA 3681 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 |||||||| | ||||||||||| ||||| ||||||| ||| || | || | |||| Sbjct 3682 ACATAATCACGAGCATGTCCCCAATCACGCTTGGCATCAATATTACCCAAGTAAAGACAG 3741 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTT 47967 ||||| ||| | ||| | || || | ||| ||||| ||||| ||||| || Sbjct 3742 TCTTGACGTCCTAAATGGATATCAGCTACAGCACGTGTGATCTTGCGAGTAACAAAGGTA 3801 Query 47968 TCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTAT 48027 |||||| | || |||||||| || || || ||||| |||||| |||||| |||| Sbjct 3802 CGACCACGACGAGGTGATTCATGGTTGAAGAGGATACCGTTACAGGTATACATCTCGTAC 3861 Query 48028 GATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAA 48087 |||||||||||||| || |||||||| |||||||| || || ||||| ||||||||| Sbjct 3862 GATTCACGATAGTTGACAACAATCCAGTAACCATAGAGCTTGGCGACACCGTAAGGAGAA 3921 Query 48088 CGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCA 48147 || ||||||||||||||||| || | || || || || || ||||| ||||||||| Sbjct 3922 CGAGGATAGAAAGGTGTGGTTTCCTTTTGAGGTGTTTCGACAACTTTACCGTAAAGTTCA 3981 Query 48148 CTGGTGGATGCTTGATAGATACGAACCCTATC--TTCCATCTCAAGCAAACGGACTGCCT 48205 ||||| ||||| |||| ||||| | ||| || | | |||| ||| | || | Sbjct 3982 GAAGTGGAGGCTTGGTAGAAGCGAACTCGATCGGTTAAACCACAAG--TACGAATGGCGT 4039 Query 48206 CAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACG 48265 | | | | || ||||| | ||||| | ||||||||| |||| ||| ||||| | Sbjct 4040 CCAAGAGACGAAGTGTGCCGAGAGCATCGACATCACCAGTATATTCGGACATGTCAAAGG 4099 Query 48266 AAACCTTTACATGA 48279 | || || |||||| Sbjct 4100 ACACTTTGACATGA 4113 >seq4556 Length=51470 Score = 241 bits (266), Expect = 2e-58 Identities = 493/720 (68%), Gaps = 27/720 (4%) Strand=Plus/Minus Query 47575 TTAGGTTCCCAACCCAATTTTTTCTTTGCCTTAGAGGCATCACCTAATAAGGTCTCTACT 47634 ||| ||| |||| ||||| | | || ||||| | | |||||| || ||| || ||| Sbjct 6256 TTACGTTTCCAATTCAATTCTGTATTGGCCTTGGTAGGATCACCCAACAAGAGATCGACT 6197 Query 47635 TCAGCAGGACGGAAATATTTAGAGTCAATTCTGATAACCGTT-TTACCA---TCAGAATC 47690 |||||||||||||||||||||| || || | || || | | || || |||| ||| Sbjct 6196 TCAGCAGGACGGAAATATTTAGGATCGATAC-GAACACGGATCTTGCCTGATTCAGCATC 6138 Query 47691 AATACCAACTTCATCAAGACCAGAACCTTCCCATCTAATATT----CATATCAAAATAAG 47746 |||| || |||| | || ||||||||| || | | | | | | | Sbjct 6137 TCTACCGACCTCATTGACGCCTTCACCTTCCCAGACGATCGTACGACCTGTGACTTTGAA 6078 Query 47747 GTGCAGATTCCTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAAT 47806 ||| ||| ||| |||| | || | || | | ||| || || | ||||||| Sbjct 6077 -TGCCTTTTCGACAA--AACTT-CTTACGGTATGTGTCTCTCCGGTAGCCAAGACAAAAT 6022 Query 47807 CATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTC 47866 | | ||| | ||||| |||||||| | ||||||| |||| ||||| || | ||||||| Sbjct 6021 CTTGAGGCTTATCTTGCTGAAGCATGAGCCACATACCCTCCACATAGTCACGAGCATGTC 5962 Query 47867 CCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGA 47926 |||| ||||| || |||| || || ||||| | ||| ||||| ||| || || Sbjct 5961 CCCAATCACGTTTGGCGTCAATGTTACCCAGATAAAGACATTCTTGACGACCCA-AGTGA 5903 Query 47927 TTG-CTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGAT 47985 | | || || | || ||||| ||||| ||||| || |||||| | || ||| Sbjct 5902 ATATCAGCTACAGCACGAGTGATCTTTCGAGTGACAAAGGTACGACCACGACGGGGTGAT 5843 Query 47986 TCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CT 48043 ||||| ||||| |||||||| ||||||||||||| |||| ||||| || ||||| | Sbjct 5842 TCATGGTTAAACAGAATACCGTTACAGGCATACATGTCGTAAGATTCTCGGTAGTTGACC 5783 Query 48044 TTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTG 48103 || |||||||| ||||||||||| || ||||||||||||||||| || ||||| |||| Sbjct 5782 GTA--ATCCAGTAACCATAGAGTTTGGCCACACCATAAGGAGAACGAGGGTAGAAGGGTG 5725 Query 48104 TGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGAT 48163 | ||||| | || || ||||| |||||||| ||||| ||| ||| || ||||| | Sbjct 5724 TAGTCTCCTTTTGAGGCGTCTCGACGACCTTACCGTAAAGCTCAGAGGTCGAGGCTTGGT 5665 Query 48164 AGATACGAACCCTATCTTCCATCTCAAGCA----AACGGACTGCCTCAAGCACTCTCAGG 48219 | | || || || || || || || ||||| || || | | | || Sbjct 5664 AAAATCGGAC----TCGGTCAGCTAAACCACAGGTACGGATGGCATCCAATAAACGAAGT 5609 Query 48220 GTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGA 48279 || || | ||||| | || ||||| || | ||| |||||||||||||| |||||| Sbjct 5608 GTACCAAGAGCATCGACATCGCCTGTATATTCAGACATGTCAAACGAAACCTTGACATGA 5549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665456416907120