Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2841 143 4e-29 seq2600 143 4e-29 seq1352 131 2e-25 seq2614 120 4e-22 seq3946 102 1e-16 >seq2841 Length=27215 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || || || || ||||||||||| ||| || Sbjct 25658 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 25599 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||||| ||||| |||||||||||||| || || || || ||| Sbjct 25598 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 25539 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| ||||| || || ||||| | || ||| ||||| ||| Sbjct 25538 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAAT 25479 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| ||||| | ||||||||||| || ||| | |||||||| || Sbjct 25478 ATACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGG 25432 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || || || || ||||||||||| ||| || Sbjct 25892 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 25833 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||||| ||||| |||||||||||||| || || || || ||| Sbjct 25832 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 25773 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| ||||| || || ||||| | || ||| ||||| ||| Sbjct 25772 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAAT 25713 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGA 156044 ||| ||||| | |||||||| || || ||| | |||||| Sbjct 25712 ATACAAAAAGAATCAACGCTTCAATTGGTATTACGTTTAAGA 25671 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || || || || ||||||||||| ||| || Sbjct 26126 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 26067 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||||| ||||| |||||||||||||| || || || || ||| Sbjct 26066 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 26007 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| ||||| || || ||||| | || ||| ||||| ||| Sbjct 26006 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAAT 25947 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGA 156044 ||| ||||| | |||||||| || || ||| | |||||| Sbjct 25946 ATACAAAAAGAATCAACGCTTCAATTGGTATTACGTTTAAGA 25905 >seq2600 Length=207564 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | || || ||||| || ||||||||||| ||| ||| Sbjct 124296 ATGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 124355 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 124356 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 124415 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| || || || || |||||| | || ||| ||||||||| Sbjct 124416 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAGCGATTATAAT 124475 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || || | || || ||||| || ||| | |||||||| || Sbjct 124476 ATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGG 124522 Score = 127 bits (140), Expect = 3e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| |||||||| || |||||||| ||| |||| Sbjct 124068 ATGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 124127 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || | || || |||||||| ||||| || ||||| || ||| Sbjct 124128 GATAGTATCGATAACGTAAAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 124187 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || || || | |||||| | ||| | || |||||| Sbjct 124188 CAACGTCTCATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACTCTCAGTGACTATAAT 124247 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || |||| | | || |||||||||||| |||||||| |||| ||| Sbjct 124248 AT-TCAAAAGGAATCAACTCTTCATTTAGTGCTAAGATTACGAGGTGGT 124295 >seq1352 Length=65141 Score = 131 bits (144), Expect = 2e-25 Identities = 146/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 |||||||||||| ||| |||||||| | ||||| || || || || || || |||||| Sbjct 16438 TAAAATGCAAATCTTTGTTAAAACACTTACTGGCAAGACCATCACTTTGGAGGTCGAATC 16379 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||||||| || |||||| || | ||||| ||||| || ||||| || ||||| || Sbjct 16378 CTCTGATAGCATCGAAAACGTCAAGCAAAAAATCCAAGACAAGGAAGGTATCCCTCCTGA 16319 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 |||||| | ||||| | ||| ||||||||||| |||||| | | || | ||||| || Sbjct 16318 TCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTA 16259 Query 155999 TAATATATCCAAAG 156012 || || || |||| Sbjct 16258 CAACAT-TCAAAAG 16246 Score = 118 bits (130), Expect = 2e-21 Identities = 141/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| ||||| || || || ||||| || |||| Sbjct 15522 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15463 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || ||||| || || ||||| ||||| || ||| Sbjct 15462 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15403 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| ||||||||||| |||||| | | || | ||||| ||||| Sbjct 15402 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15343 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 15342 AT-TCAAAAG 15334 Score = 118 bits (130), Expect = 2e-21 Identities = 141/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| ||||| || || || ||||| || |||| Sbjct 15978 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15919 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | || || ||||| || || ||||| ||||| || ||| Sbjct 15918 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15859 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| ||||||||||| |||||| | | || | ||||| ||||| Sbjct 15858 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15799 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 15798 AT-TCAAAAG 15790 >seq2614 Length=127402 Score = 120 bits (132), Expect = 4e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | ||||| ||||| ||||| || ||||||||| |||| Sbjct 58957 ATGCAGATTTTCGTCAAAACCCTTACTGGTAAAACCATTACCTTGGAAGTCGAATCTTCT 59016 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || | || || ||||| || ||||| || ||||| || || Sbjct 59017 GATAGTATTGAGAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 59076 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||| | ||| |||||||||||||||||| Sbjct 59077 CAACGTTTGATCTTTGCTGGTAAGCAGCTCGAAGAT 59112 Score = 113 bits (124), Expect = 7e-20 Identities = 123/162 (76%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 155818 ATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 ||||| |||||||| ||| | || || | || ||||| ||||| || |||||||||||| Sbjct 58723 ATAAACATGCAAATCTTTGTAAAGACCCTTACAGGAAAGACTATCACTTTAGAAGTCGAA 58782 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 |||||||| || ||| || || | || || ||||| || ||||| || |||||| Sbjct 58783 TCTTCTGATAGCATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCA 58842 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || |||||| | | |||| ||| ||||| || ||||||||| Sbjct 58843 GACCAACAACGTCTCATTTTTGCTGGTAAACAACTCGAAGAT 58884 >seq3946 Length=52427 Score = 102 bits (112), Expect = 1e-16 Identities = 271/408 (66%), Gaps = 11/408 (3%) Strand=Plus/Plus Query 17885 TTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTA 17944 || || || || || |||||||||| || ||| || | || |||||| ||||| ||||| Sbjct 26050 TTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATCCATAAAGTCAAACGGATTC 26109 Query 17945 GTGGTTTTATAATATTTTTCTTGTATTAATTCGTATA-ATAAT-CTATCTGCTACAAATT 18002 || | ||||| ||| || | | | | | |||| | ||| || || |||| Sbjct 26110 GTTGCCATATAAATTTTATC--GAACCCAAGAGCAACCATAAGACGATCAGCAACGAATT 26167 Query 18003 CGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAA 18062 | | ||||| |||||||| |||||||||| | | | | ||||| ||||| Sbjct 26168 CAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGCAACAGGTAATGCATCGG 26227 Query 18063 TAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTG 18122 | | ||||||| || || | |||| || |||| || | | || | | | ||| Sbjct 26228 TTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATATCCTTCACAC--GTTGTTG 26285 Query 18123 GCAA--TTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACC 18180 || | || ||| || ||| || | || | ||| || ||||| || || | ||| Sbjct 26286 GCTAGGTTGTTTACGAATATGAGTAAAC---AAAAGACAAGCGAAATCGGTATGAAGACC 26342 Query 18181 TTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttt 18240 ||| || | | || ||||| |||||||| || || |||||||| | ||| | ||| || Sbjct 26343 TTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCATCAAACCACGTTTCTT 26402 Query 18241 tAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC 18288 |||||||| || || || || | |||||||||||||| || || Sbjct 26403 AAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTTCTAC 26450 Score = 98.7 bits (108), Expect = 1e-15 Identities = 200/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 18407 TCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGT 18466 |||||||||| |||||||||||| || || || || | | || |||| || || Sbjct 26624 TCTTTTTCTTCATCATCTTTTATATAGGTATCAATCAAAAGACTGTATGTTTCTGAGTGA 26683 Query 18467 ATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATATTGAATCTC 18525 || |||| || || ||||| | |||||| || |||| || || || |||| | || Sbjct 26684 ATATTTTCAATCATGATTTGAAAGCCATAAAAACATTTAGCTTCAGGAATTTTGACT-TC 26742 Query 18526 GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT-GCGAAAAATG 18584 | |||| ||| |||||||| ||||| || ||||| |||| || | || || || | Sbjct 26743 ATCACAAAAGTTTTGCACCAAATTTTCATTTACAATACCATCAG-AGCTGGCAAAGAAAG 26801 Query 18585 CCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT---CCATTCATCTA 18641 ||||||| ||| ||| | ||||| || | | ||||| ||| |||| | Sbjct 26802 CCAAAACGCGAGAAATAAAAAATCGCTCATTCTCAGTCATTTTGTTTTCCCAATCATTTT 26861 Query 18642 TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 |||| | || ||| | |||||| | |||||||||||||| ||| |||| Sbjct 26862 GATCTCTACTTAAATCTATTTCTTCAGCTGTCCAAAAAGATGCTTCTGCCT 26912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731830228405600