Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2717 154 4e-32 seq2767 147 6e-30 seq2389 136 1e-26 seq2418 127 6e-24 seq3946 87.8 5e-12 >seq2717 Length=56950 Score = 154 bits (170), Expect = 4e-32 Identities = 230/323 (71%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||| | ||||||||||||||| | ||||| | ||| || | ||||| | | || | Sbjct 35622 TTTACCGATAGCATCAATTTCGTCTACAAAAATAATACAAGGTGCATTTTTTTTGGCTGT 35681 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||||| ||||| ||||| || | ||||| |||||| |||||||||||||||| || Sbjct 35682 AGCAAATAAGTCTCTAACACGAGAAGATCCAACACCAACGAACATTTCTACAAATTCTGA 35741 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | | || || | ||| | |||| ||||| |||||| ||| | |||| || || Sbjct 35742 ACCAGAAACACTCAAGAAAGGTACACCAGCTTCACCTGCTGTGGCCTTTGCCAAGAGGGT 35801 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCCAGC 289262 ||||| || |||||||||| || | |||| | ||||| || | |||| ||| Sbjct 35802 TTTACCAGTACCAGGTGGTC---CTGAAAGAATGGCACCCTTAGGGATGGTTGCACCA-- 35856 Query 289263 AGAC--TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 |||| | ||| ||| || |||| ||||||| |||| |||| || ||| | ||| Sbjct 35857 AGACGTTCATAAACCTCGGGATTCTTCAAAAATTTAACAAATTCCATAATTTCCTCTTTG 35916 Query 289321 GCCTCATCACATCCTGCTACATC 289343 || || || ||| || ||||| Sbjct 35917 GCTTCGTCTGCTCCAGCAACATC 35939 >seq2767 Length=51584 Score = 147 bits (162), Expect = 6e-30 Identities = 227/324 (70%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||||| ||||||| | ||| | ||||||||||||||| |||||||| Sbjct 11166 ATCATACTTAACCATAACATCTTCCAAAGCCTTTACTAAACGACGCTGAATGTAACCAGT 11225 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | ||| || |||||||||||||| ||||| |||||||||||||||| |||||||| Sbjct 11226 TTCGGCTGTCTTAACAGCTGTATCAATAAGACCTTCACGACCACCCATAGCGTGGAAGAA 11285 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | |||| || || || | | | | || | ||||| |||||||| || || Sbjct 11286 AAACTCTGTGGGAGTTAAACCTCTCAAATAAGAATTTTCAACAAAACCACGACTTTCTGG 11345 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 | ||| || | |||||| |||| || | | || |||| || |||||||| Sbjct 11346 ACTGTGATCGTCTTTAGAAAAGTGAGGCAACGTACGGAACTTGAAGCCATAAGGGATACG 11405 Query 302793 CTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACT 302852 || || ||||| || || || || | || | | ||| || |||||||| | | | Sbjct 11406 TTTACCTTCAACATTTTGTTGACCAACACAAGCAGACATTTGTGAAATATTAATAAAAGA 11465 Query 302853 GCCCTTGGAGCCAGCATTTACCAT 302876 || || || |||||| ||||||| Sbjct 11466 ACCTTTTGAACCAGCAATTACCAT 11489 Score = 102 bits (112), Expect = 2e-16 Identities = 114/148 (77%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 301815 AATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAG-ACTTGGACGCAACACCAGCA 301872 |||||| ||||| ||| || |||||| | || ||||| ||||| ||||||||| Sbjct 10346 AATTTCCTTCAA-ACGAGGCACACCAAGAGTGACGTTTTTACTTGAT----ACACCAGCA 10400 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||| ||||||| ||| | |||||| | || ||||||||| ||| || ||||| Sbjct 10401 TAATGGAAGGTATTCAAAGTCATTTGAGTGGCAGGTTCACCAATAGATTGAGCAGCAATG 10460 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAA 301960 ||||||||||||| |||||||| |||| Sbjct 10461 GTACCAACCATTTCACCTGGTGCAACAA 10488 >seq2389 Length=30206 Score = 136 bits (150), Expect = 1e-26 Identities = 324/489 (66%), Gaps = 3/489 (1%) Strand=Plus/Plus Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCC 156068 ||||||| ||| |||||| |||||||| ||||| || | | | ||||| || Sbjct 12842 ATATCAGCATGCCATGGCTCGAGATACATGGCAAAGGCTCCTGGACGCTTGTTGCCGCCT 12901 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 ||||| ||||| || || || |||||||| |||| | ||| |||| | ||| || ||| Sbjct 12902 TGATCGACATAACGTGCTGTGTTATTGAATACACGCAACATGGGAAGCAAACCGTTCGAA 12961 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 ||||| || ||| ||||| || ||| | |||| ||||||||| | || || Sbjct 12962 TAACCATTTGTACCGGCAATATAGGATCCATTGGCACGAATATTATGAATGTTGAGACCG 13021 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 |||||||||| ||| |||||||| || || |||| || | | || |||||| Sbjct 13022 ATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTTAATGTTTCATAGATGCCTTCA 13081 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 || ||||| || | ||| | || | |||| || | ||||| || ||||| || Sbjct 13082 ATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGACATCTGAGGACGAGGTGTACCG 13141 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTC 156368 || ||||| | ||||| | |||||| |||| | || | ||||| | | ||| ||| Sbjct 13142 GCATTGAACAAAGTAGGACTGGCATGAGTAAAGAATTTCTCGGACATCAAGTTGTAAGTC 13201 Query 156369 TCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGC 156428 || | |||| || ||||| |||| || | ||| | ||| | ||| Sbjct 13202 TCGATTGCAGCGTCAATATCTTCACCGTGGATACCAATGGCGACACGCATGATAAGATGT 13261 Query 156429 TGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTA 156488 ||||||||||| | || || ||||| || || || | ||||| ||||| || Sbjct 13262 TGAGGACGCTCGGCGGTCTTGCCGTCAATCTTGAGTAGATAGGATCGTTCAAGAGTCTTG 13321 Query 156489 AACCCGAAA 156497 || || ||| Sbjct 13322 AATCCAAAA 13330 >seq2418 Length=25572 Score = 127 bits (140), Expect = 6e-24 Identities = 250/364 (69%), Gaps = 12/364 (3%) Strand=Plus/Minus Query 380906 AAGAACTACTATGGTTTATTAAGGGTGATACATCAAACAGAAGGCTA-AAGGCACAGAAT 380964 ||||||| || |||||||| ||||| ||||| | | || || || || | | ||| Sbjct 14461 AAGAACTTCTTTGGTTTATCAAGGGCGATAC-TAACTCAAAACACTTGAATGAGCGCAAT 14403 Query 380965 GTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAAT 381024 || || |||||| |||| || || ||||||||| | ||| | ||||| || || Sbjct 14402 GTCAAGATCTGGGATGGCAACGGCTCTCGTGAGTTCCTTGATAAGCTGGGTCTTACTCAT 14343 Query 381025 AACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGAT 381084 | ||||| ||| |||||||| | || || || ||||||||||| ||| ||| | Sbjct 14342 CGCCGAGAAGGTGATCTTGGTCCAGTCTATGGGTTCCAGTGGAGACACTTTGGAGCCAAG 14283 Query 381085 TATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCATA 381144 || | | ||||||||| ||| |||| |||| | || | || |||||| | | | ||| Sbjct 14282 TACGTTGATTGTGATACTGACTATAGTGGTCAAGGCATTGATCAGTTACAGCAAGTGATA 14223 Query 381145 G--ACCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTGGA 381202 | |||| | |||||| | ||| ||| | | ||| | ||| | |||| |||| Sbjct 14222 GATACCA--TTAAAAATAATCCAAC-AGATA-----GACGAATTATTCTCTCTGCTTGGA 14171 Query 381203 ATCCTTGCCAGATTAATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAATG 381262 ||||| | ||| | ||||||||||| ||||| ||| ||| || ||||| ||| Sbjct 14170 ATCCTGCAGATATTCCTATAATGGCTTTACCTCCTTGTCATGCTTTTTGTCAGTTTTATG 14111 Query 381263 TTTC 381266 |||| Sbjct 14110 TTTC 14107 >seq3946 Length=52427 Score = 87.8 bits (96), Expect = 5e-12 Identities = 154/221 (70%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| |||||||| || ||||||||||| | |||||||| | || | | Sbjct 26539 TTCCCTGTATTAAGCGTAAGGCTGACTGGGCTTTCAAATGGATTTCTGCTAATGATTCC- 26481 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| ||||||||||||| |||||| || || || || || | | Sbjct 26480 --TTTGCTGAGCGTCTTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCCGGCTCAT 26423 Query 133557 TCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | |||| |||||||||||||||| || |||||| | | || || || |||| ||| Sbjct 26422 T-TGCTTCTATTTTTTGGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAAT 26364 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||| | |||| | ||||| | ||||| ||||| || || Sbjct 26363 GAATTGATTTGTCGTGACGAAGGTCTTCATACCGATTTCGC 26323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471731495910742