Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3625 113 6e-19 seq4556 105 8e-17 >seq3625 Length=93257 Score = 113 bits (124), Expect = 6e-19 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| | | ||| || || |||||||| ||||| || || | || Sbjct 85291 GCTTGGCGAGTTCACCGGGAAGGATGAGACGAACGGCGGTTTGGATTTCACGAGAAGAGA 85232 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| || |||| | ||| || | | |||| || || | | Sbjct 85231 TGGTGGAACGCTTGTTGTAGGCGGCCAACTTGGAGGCTTCAGAGGCGATACGTTCAAAGA 85172 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || ||||||| || ||||| | |||||||||||| || ||| |||| Sbjct 85171 TATCGTTGACGAAGGAGTTCAAGATAGACATGGCCTTGTTGGAGATACCAGTGTCAGGGT 85112 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| | |||||||||||| | || ||||| Sbjct 85111 GAACTTGCTTCAAGACCTTGTAGATGTAAGAAGAGTA 85075 >seq4556 Length=51470 Score = 105 bits (116), Expect = 8e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || |||| ||||| ||| || ||||||| | |||||||| | || || || Sbjct 9892 ACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGGCATCAAACCACGTTT 9951 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| | ||||||||||| | ||| ||| || || |||||||| ||||| |||||||| Sbjct 9952 CTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCCTTCGACAGCGGCAAA 10011 Query 869299 GCCGATGAGCCGCTCGGCAAAGG 869321 | ||| || || || ||||||| Sbjct 10012 GGCGACCAGACGTTCAGCAAAGG 10034 Score = 98.7 bits (108), Expect = 1e-14 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 || ||||||||||||||||| | || ||||||| ||||| | ||| ||||| | Sbjct 9605 TCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTCCATAAAGTCGAATGGGTTAGTA 9664 Query 868778 GTCTTGTAGTGCTTTTCGCATCC--GAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGA 868835 | ||||| ||| ||| |||| |||||| | | || || || ||||| || |||| Sbjct 9665 GCATTGTAAATCTTGTCGAATCCAAGAGCGA--CCATGAGACGATCAGCGACGAATTCGA 9722 Query 868836 TGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCA 868895 | ||||| ||||| | | |||||||| ||||| | || || ||||| | || || Sbjct 9723 TATACTGACACATCAAGGTAGCGTTCATACCGATCAATGCAACAGGCAGAGCATCCGACA 9782 Query 868896 CAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || |||| ||||| ||||||| || || ||||| Sbjct 9783 GGAATTCTTGTTCGATACCGACGGCTTCTACAATGAT 9819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106764492657422