Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3625 154 2e-31 seq2710 136 6e-26 seq3105 118 2e-20 seq4556 102 1e-15 >seq3625 Length=93257 Score = 154 bits (170), Expect = 2e-31 Identities = 181/242 (75%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||||| |||| ||||| ||| | | Sbjct 85330 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCGAGTTCACCGGGAA 85271 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || |||||||| ||||| || || | ||| ||| |||||||| || Sbjct 85270 GGATGAGACGAACGGCGGTTTGGATTTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAG 85212 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || | | |||| || || | || |||||||| || |||||| Sbjct 85211 GCGGCCAACTTGGAGGCTTCAGAGGCGATACGTTCAAAGATATCGTTGACGAAGGAGTTC 85152 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || ||| ||||| || ||||| | |||||| Sbjct 85151 AAGATAGACATGGCCTTGTTGGAGATACCAGTGTCAGGGTGAACTTGCTTCAAGACCTTG 85092 Query 1485709 TA 1485710 || Sbjct 85091 TA 85090 >seq2710 Length=94120 Score = 136 bits (150), Expect = 6e-26 Identities = 186/257 (72%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| || |||||||||||| |||| ||||| || | | Sbjct 54962 TGTACTTGGTGACGGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCGAGTTCACCAGGAA 55021 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || ||||| ||||| || || | ||| ||| |||||||| || Sbjct 55022 GAATAAGACGAACAGCGGTTTGGATTTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAG 55080 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || | | || || || | || || ||||| || |||||| Sbjct 55081 GCAGCCAACTTGGAGGCTTCAGAAGCAATACGTTCAAAGATATCATTGACGAAGGAGTTC 55140 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || |||||||| || ||||| | |||||| Sbjct 55141 AAGATGGACATGGCCTTGTTGGAGATACCAGTATCGGGGTGAACTTGCTTCAAGACCTTG 55200 Query 1485709 TAAACAAAGGACGAGTA 1485725 || | | | || ||||| Sbjct 55201 TAGATATAAGAGGAGTA 55217 Score = 136 bits (150), Expect = 6e-26 Identities = 186/257 (72%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| || |||||||||||| |||| ||||| || | | Sbjct 70360 TGTACTTGGTGACGGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCGAGTTCACCAGGAA 70301 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || ||||| ||||| || || | ||| ||| |||||||| || Sbjct 70300 GAATAAGACGAACAGCGGTTTGGATTTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAG 70242 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || | | || || || | || || ||||| || |||||| Sbjct 70241 GCAGCCAACTTGGAGGCTTCAGAAGCAATACGTTCAAAGATATCATTGACGAAGGAGTTC 70182 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || |||||||| || ||||| | |||||| Sbjct 70181 AAGATGGACATGGCCTTGTTGGAGATACCAGTATCGGGGTGAACTTGCTTCAAGACCTTG 70122 Query 1485709 TAAACAAAGGACGAGTA 1485725 || | | | || ||||| Sbjct 70121 TAGATATAAGAGGAGTA 70105 >seq3105 Length=181656 Score = 118 bits (130), Expect = 2e-20 Identities = 173/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || ||||||||| |||| ||||| || | | Sbjct 46095 TGTACTTGGTGACGGCCTTGGTGCCTTCAGAAACGGCGTGCTTGGCGAGTTCACCAGGGA 46036 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || ||||| ||||| || || | ||| ||| |||||||| || Sbjct 46035 GGATAAGACGAACAGCGGTTTGGATTTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAG 45977 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || | | || || || | || || ||||| || |||||| Sbjct 45976 GCAGCCAACTTGGAGGCTTCAGAAGCAATACGTTCAAAGATATCATTGACGAAGGAGTTC 45917 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||| ||||| || || ||||| || ||||| | |||||| Sbjct 45916 AAGATGGACATGGCCTTGTTAGAGATACCAGTATCAGGGTGAACTTGCTTCAAGACCTTG 45857 Query 1485709 TA 1485710 || Sbjct 45856 TA 45855 >seq4556 Length=51470 Score = 102 bits (112), Expect = 1e-15 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || |||| ||||||||| || |||||| | |||||||| | || || || Sbjct 9892 ACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGGCATCAAACCACGTTT 9951 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| | ||||||||||| ||| ||| || || |||||||| ||||| |||||||| Sbjct 9952 CTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCCTTCGACAGCGGCAAA 10011 Query 794460 GCCGACGAGCCGCTCGGCAAA 794480 | |||| || || || ||||| Sbjct 10012 GGCGACCAGACGTTCAGCAAA 10032 Score = 91.5 bits (100), Expect = 2e-12 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 || ||||||||||||||||| | || ||||||| ||||| | ||| ||||| | Sbjct 9605 TCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTCCATAAAGTCGAATGGGTTAGTA 9664 Query 793986 GTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | ||| ||| ||| | || ||||||| || | || || || ||||||||||| | Sbjct 9665 GCATTGTAAATCTTGTCGAATCCAAGAGCGAC-CATG-AGACGATCAGCGACGAATTCGA 9722 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 | ||||| ||||| | || |||||||| ||||| | || || ||||| | | | || Sbjct 9723 TATACTGACACATCAAGGTAGCGTTCATACCGATCAATGCAACAGGCAGAGCAT--CCGA 9780 Query 794104 CA--AACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 || || |||| ||||| ||||||| || | ||||| Sbjct 9781 CAGGAATTCTTGTTCGATACCGACGGCTTCTACAATGAT 9819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915760693754474