Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2614 111 1e-19 seq1352 91.5 1e-13 >seq2614 Length=127402 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||| |||||||| ||||| || ||| | || |||| Sbjct 58940 AGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTACGACCATCT 58881 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || || || || ||||| |||||| | || | || |||||||| Sbjct 58880 TCGAGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCT 58821 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||||| || || || | ||||| ||| | ||||| || | || || Sbjct 58820 TGGATCTTTTGCTTTAC--AT--TTTCGATGCTATCAGAAGATTCGACTTCTAAAGTGAT 58765 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| || ||||||||||||||||| |||||| Sbjct 58764 AGTCTTTCCTGTAAGGGTCTTTACAAAGATTTGCATG 58728 >seq1352 Length=65141 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||||||||| || ||| |||| |||| || || ||||| || || ||| Sbjct 15332 TCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAG 15391 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || || || || | || | ||||||||||| | || ||||| ||||| || Sbjct 15392 ATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTTGCTTGAC--AT 15449 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || ||| | ||| || || | || ||||| || || || | ||||| | Sbjct 15450 TCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGA 15509 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 15510 CAAAAATTTGCAT 15522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||||||||| || ||| |||| |||| || || ||||| || || ||| Sbjct 15788 TCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAG 15847 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || || || || | || | ||||||||||| | || ||||| ||||| || Sbjct 15848 ATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTTGCTTGAC--AT 15905 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || ||| | ||| || || | || ||||| || || || | ||||| | Sbjct 15906 TCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGA 15965 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 15966 CAAAAATTTGCAT 15978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325674675806354