Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1352 93.3 3e-14 >seq1352 Length=65141 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| || || |||||||| || | ||| ||| || Sbjct 15522 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15463 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||| | | | | || || ||||||||| || || || ||| | || ||||| Sbjct 15462 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15403 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| ||||| ||||| || || | | || | | ||||| ||| Sbjct 15402 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15343 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||| ||||| | ||| |||| Sbjct 15342 ATTCAAAAGGAATCTACTCTCCACTTGGT 15314 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| || || |||||||| || | ||| ||| || Sbjct 15978 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTGGAAGTTGAGTCTTCT 15919 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||| | | | | || || ||||||||| || || || ||| | || ||||| Sbjct 15918 GATAGTATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATTCCTCCTGATCAA 15859 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| ||||| ||||| || || | | || | | ||||| ||| Sbjct 15858 CAGCGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTATAAC 15799 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||| ||||| | ||| |||| Sbjct 15798 ATTCAAAAGGAATCTACTCTCCACTTGGT 15770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| ||||| || || || ||||| || | ||| ||| || Sbjct 15750 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCT 15691 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||| | | | || || ||||||||| ||||| || ||| | || |||||| Sbjct 15690 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAG 15631 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || |||| || |||||||| |||| |||| || || ||||||||| Sbjct 15630 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAAC 15571 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||| || || | ||| |||| Sbjct 15570 ATCCAAAAGGAATCCACTCTCCACTTGGT 15542 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| ||||| || || || ||||| || | ||| ||| || Sbjct 16206 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCT 16147 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||| | | | || || ||||||||| ||||| || ||| | || |||||| Sbjct 16146 GATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAG 16087 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || |||| || |||||||| |||| |||| || || ||||||||| Sbjct 16086 CAACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAAC 16027 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||| || || | ||| |||| Sbjct 16026 ATCCAAAAGGAATCCACTCTCCACTTGGT 15998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398854603253974