Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2600 190 3e-43 seq2841 165 1e-35 seq2614 109 9e-19 seq1352 96.9 5e-15 seq3863 84.2 3e-11 >seq2600 Length=207564 Score = 190 bits (210), Expect = 3e-43 Identities = 182/232 (78%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || || | ||||| |||||||| || | || || ||| | || Sbjct 124297 TGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCCG 124356 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| |||| |||||| ||| |||||||| |||||||| ||||||| Sbjct 124357 ATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAAC 124416 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| || |||||| |||| ||| | | || |||| |||||||||| Sbjct 124417 AAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAGCGATTATAATA 124476 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATA 146263 ||||||| ||||| || ||||||| |||||||| |||||||| || ||||| Sbjct 124477 TACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGG-AAATA 124527 Score = 132 bits (146), Expect = 8e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || || ||||| || ||| | || || ||| | | Sbjct 124069 TGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCTG 124128 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| ||| | || ||||| | || || ||| ||| ||||| ||||| || ||||||| Sbjct 124129 ATAGTATCGATAACGTAAAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAAC 124188 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| ||||| || ||||||||||| ||| | | || | | || ||||||| Sbjct 124189 AACGTCTCATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACTCTCAGTGACTATAATA 124248 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||| ||||| ||| | |||||||| || ||||| |||| |||| ||||||| Sbjct 124249 TTCAAAAGGAATCAACTCTTCATTTAGTGCTAAGATTACGAGGTGGTATGCAAATATT 124306 >seq2841 Length=27215 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | ||||| || ||||| || | || || ||| || Sbjct 25657 TGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCCG 25598 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || |||| ||||| ||| ||||||||| || ||||||||||||| Sbjct 25597 ATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAAC 25538 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||||||| | || || | | || |||| ||||| |||| Sbjct 25537 AAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAATA 25478 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 ||||||||||||| || | ||||| |||||||| |||||||| || || Sbjct 25477 TACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGGAAA 25429 Score = 156 bits (172), Expect = 7e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | ||||| || ||||| || | || || ||| || Sbjct 25891 TGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCCG 25832 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || |||| ||||| ||| ||||||||| || ||||||||||||| Sbjct 25831 ATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAAC 25772 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||||||| | || || | | || |||| ||||| |||| Sbjct 25771 AAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAATA 25712 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGA 146252 ||||||||||||| || | || || |||||||| |||||| Sbjct 25711 TACAAAAAGAATCAACGCTTCAATTGGTATTACGTTTAAGA 25671 Score = 156 bits (172), Expect = 7e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | ||||| || ||||| || | || || ||| || Sbjct 26125 TGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCCG 26066 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || |||| ||||| ||| ||||||||| || ||||||||||||| Sbjct 26065 ATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAAC 26006 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||||||| | || || | | || |||| ||||| |||| Sbjct 26005 AAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAATA 25946 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGA 146252 ||||||||||||| || | || || |||||||| |||||| Sbjct 25945 TACAAAAAGAATCAACGCTTCAATTGGTATTACGTTTAAGA 25905 Score = 118 bits (130), Expect = 2e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 146118 ATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAA 146177 || ||| |||| | || || |||||||||||||||||||| |||||||| ||||||||| Sbjct 26273 ATCCAAGATAAACATGGTATCCCACCCGATCAACAAAGACTAATTTTTGCTGGTAAACAA 26214 Query 146178 TTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTA 146237 | || || | | || |||| ||||| ||||||||||||||||| || | || || Sbjct 26213 CTTGAAGAGGGTCGTACATTAAGTGATTACAATATACAAAAAGAATCAACGCTTCAATTG 26154 Query 146238 GTATTACGATTAAGA 146252 |||||||| |||||| Sbjct 26153 GTATTACGTTTAAGA 26139 >seq2614 Length=127402 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || | |||||||| || || ||| | || || ||| | | Sbjct 58730 TGCAAATCTTTGTAAAGACCCTTACAGGAAAGACTATCACTTTAGAAGTCGAATCTTCTG 58789 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| || |||||||||| | || || ||| || ||||| ||||| || || |||| Sbjct 58790 ATAGCATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAAC 58849 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||||||||| ||||||||| | || ||| | | || | |||| || || | Sbjct 58850 AACGTCTCATTTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTTTCAGACTACAACA 58909 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| ||| |||| || || Sbjct 58910 TTCAAAAGGAATCCACTCTCCACTTGGT 58937 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || || ||||| || ||| | || || || | | Sbjct 59186 TGCAGATTTTCGTCAAAACCCTTACTGGTAAAACCATCACTTTAGAAGTTGAGTCTTCTG 59245 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| |||| |||||||||| | || || ||| || ||||| ||||| || || |||| Sbjct 59246 ATAGTATTGAAAATGTAAAGCAAAAGATTCAAGACAAGGAAGGGATTCCTCCTGACCAAC 59305 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||||||||| ||| | || | |||| || || | Sbjct 59306 AACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGCCGTACCCTTTCAGACTACAACA 59365 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| | || || || Sbjct 59366 TTCAAAAAGAATCCACTCTTCACTTGGT 59393 >seq1352 Length=65141 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || || || || ||| | || || || | | Sbjct 15749 TGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCTG 15690 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| ||| | ||||| || | || || ||| ||| || |||||||| || ||||| | Sbjct 15689 ATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAGC 15630 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || ||||||||||| || || | | || || | || || || | Sbjct 15629 AACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAACA 15570 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| ||| |||| || || Sbjct 15569 TCCAAAAGGAATCCACTCTCCACTTGGT 15542 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || || || || ||| | || || || | | Sbjct 16205 TGCAAATTTTCGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTCGAGTCTTCTG 16146 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| ||| | ||||| || | || || ||| ||| || |||||||| || ||||| | Sbjct 16145 ATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAGC 16086 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || ||||||||||| || || | | || || | || || || | Sbjct 16085 AACGTCTCATTTTCGCTGGTAAACAATTGGAAGACGGTCGCACTTTGAGTGACTACAACA 16026 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| ||| |||| || || Sbjct 16025 TCCAAAAGGAATCCACTCTCCACTTGGT 15998 >seq3863 Length=144211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| || | || || ||| || ||||| ||||| || |||||| Sbjct 120116 GACACCATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 120057 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | |||||||| || ||||||||||| || ||| | | || || | || || || Sbjct 120056 CAACGTCTCATTTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGAGTGACTACAAC 119997 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||| ||||| ||| | || || || Sbjct 119996 ATTCAAAAGGAATCTACTCTTCACTTGGT 119968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786121529552720