Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2614 156 3e-33 seq1352 152 4e-32 seq2600 149 5e-31 seq2841 123 2e-23 seq3863 105 5e-18 seq2553 93.3 3e-14 >seq2614 Length=127402 Score = 156 bits (172), Expect = 3e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| |||||||||||||||||||| || || | || ||| || Sbjct 59400 ACGAAGGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAAAGGGTACGGCC 59341 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| |||||| | ||||| | ||| || || || ||||| || || || Sbjct 59340 ATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGAGGAATCCCTTCCTT 59281 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||| || ||| |||| | | | |||||| || ||||| | ||| || Sbjct 59280 GTCTTGAATCTTTTGCTTTACATTTTCAATACTATCAGAAGACTCAACTTCTAAAGTGAT 59221 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | |||||| || || |||||||| Sbjct 59220 GGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCAT 59185 Score = 154 bits (170), Expect = 1e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| || || |||||||| ||||||||||| ||||| | ||| || ||| Sbjct 59172 ACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCACTCAA-AGTACGAC 59114 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| ||||| || || |||||| | ||||| | ||||||||| || |||||||| || | Sbjct 59113 CATCTTCGAGCTGCTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATACCTTCCT 59054 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | ||||| ||||| | || | | | |||||| ||| ||||| | || | Sbjct 59053 TGTCTTGAATCTTTTGCTTGACGTTCTCAATACTATCAGAAGATTCGACTTCCAAGGTAA 58994 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| | |||||| || || |||||||| Sbjct 58993 TGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCAT 58957 Score = 149 bits (164), Expect = 5e-31 Identities = 168/224 (75%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || |||||||| ||||||||||| || || | || ||| ||| Sbjct 58944 ACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTACGACC 58885 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| |||||| | || | | ||| || || || |||||||| || || Sbjct 58884 ATCTTCGAGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTT 58825 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||| || ||| |||| | | |||||| ||| ||||| | ||| || Sbjct 58824 GTCTTGGATCTTTTGCTTTACATTTTCGATGCTATCAGAAGATTCGACTTCTAAAGTGAT 58765 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT-TTTAAAA 29793 ||| || || || | ||| || ||||| || ||||| |||| || Sbjct 58764 AGTCTTTCCTGTAAGGGTCTTTACAAAGATTTGCATGTTTATAA 58721 >seq1352 Length=65141 Score = 152 bits (168), Expect = 4e-32 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || ||||| ||||||||||| || || | || |||||| Sbjct 16219 ACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCC 16278 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | ||||| | ||| ||||| || || ||||| || || Sbjct 16279 ATCTTCAAGCTGCTTACCAGCAAAGATCAAACGTTGTTGATCAGGAGGGATACCTTCCTT 16338 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||| ||||| |||| | | ||||| ||| || || | ||| || Sbjct 16339 GTCTTGGATTTTTTGCTTGACGTTTTCGATGCTATCAGAGGATTCGACCTCCAAAGTGAT 16398 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 || |||||||| | ||||||||||| || ||||||||||| Sbjct 16399 GGTCTTGCCAGTAAGTGTTTTAACAAAGATTTGCATTTTAAA 16440 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || ||||| |||||||||||||| || | || |||||| Sbjct 15307 ACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCC 15366 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | ||||| | || ||||| || ||||| ||||| || Sbjct 15367 ATCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTT 15426 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||| |||||| | || | | | |||||| || ||||| | ||| || Sbjct 15427 GTCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGAT 15486 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || || || ||||| || ||||| Sbjct 15487 GGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15522 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || ||||| |||||||||||||| || | || |||||| Sbjct 15763 ACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCC 15822 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | ||||| | || ||||| || ||||| ||||| || Sbjct 15823 ATCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTT 15882 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||| |||||| | || | | | |||||| || ||||| | ||| || Sbjct 15883 GTCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGAT 15942 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || || || ||||| || ||||| Sbjct 15943 GGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15978 >seq2600 Length=207564 Score = 149 bits (164), Expect = 5e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 ||| || || ||||| | |||||||| || || ||||| ||||| || |||||||| | Sbjct 124523 TCCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCGCT 124464 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| | ||| ||| || ||||||||||||||| | || | |||||| ||||| || | Sbjct 124463 TAATG-TACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTG 124405 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||| ||||||||||| | ||| ||| ||| | || | || || ||| ||| | Sbjct 124404 GAATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATCGGAAGATTCAA 124345 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || || |||||||| || | || || |||||||| ||||| Sbjct 124344 CTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCAT 124296 Score = 138 bits (152), Expect = 9e-28 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| |||||||| || ||||| |||||||| ||||| || | || ||| ||| Sbjct 124279 AGCACTAAATGAAGAGTTGATTCCTTTTGAATATTATAGTCACTGAGAGTACGACCATCT 124220 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||||||||||||| | || | | ||| ||||| || |||||||| || || ||| Sbjct 124219 TCTAATTGTTTGCCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTATCT 124160 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||||| || || | || | | | |||||| ||| ||||| | ||| |||||| Sbjct 124159 TGAATCTTTTGCTTTACGTTATCGATACTATCAGAAGATTCAACTTCTAAAGTGATAGTT 124100 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 || ||||| | ||| || ||||| || ||||| ||||| Sbjct 124099 TTACCAGTAAGGGTCTTGACAAAAATTTGCATAATAAAA 124061 >seq2841 Length=27215 Score = 123 bits (136), Expect = 2e-23 Identities = 170/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 29554 CGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAA 29613 |||| ||| || || ||||| | |||||||||||||| ||||||||||| || || ||| Sbjct 25427 CGTT-TCCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAA 25485 Query 29614 TC-CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATC 29672 || | ||| || ||| || || |||||||| |||||| | || | |||||| ||||| Sbjct 25486 TCACTTAAT-GTACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATC 25544 Query 29673 CGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAG 29732 || || ||||| ||||| ||||| | ||| ||| || | || | || || || Sbjct 25545 GGGTGGGATACCTTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGA 25604 Query 29733 TTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| | || || || ||||| || | || || ||||| || ||||| Sbjct 25605 TTCAACTTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 25658 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 29566 CTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGT 29624 || ||||| | ||||| |||||||| ||||||||||| || || ||||| | ||| || Sbjct 25672 CTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAAT-GT 25730 Query 29625 GCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACC 29684 ||| || || |||||||| |||||| | || | |||||| ||||| || || ||||| Sbjct 25731 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 25790 Query 29685 CTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAG 29744 ||||| ||||| | ||| ||| || | || | || || || ||| ||||| | Sbjct 25791 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 25850 Query 29745 AGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || | || || ||||| || ||||| Sbjct 25851 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 25892 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 29566 CTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGT 29624 || ||||| | ||||| |||||||| ||||||||||| || || ||||| | ||| || Sbjct 25906 CTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAAT-GT 25964 Query 29625 GCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACC 29684 ||| || || |||||||| |||||| | || | |||||| ||||| || || ||||| Sbjct 25965 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 26024 Query 29685 CTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAG 29744 ||||| ||||| | ||| ||| || | || | || || || ||| ||||| | Sbjct 26025 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 26084 Query 29745 AGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || | || || ||||| || ||||| Sbjct 26085 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCAT 26126 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 29566 CTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGT 29624 || ||||| | ||||| |||||||| ||||||||||| || || ||||| | ||| || Sbjct 26140 CTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAAT-GT 26198 Query 29625 GCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACC 29684 ||| || || |||||||| |||||| | || | |||||| ||||| || || ||||| Sbjct 26199 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 26258 Query 29685 CTCTTTGTCTTG 29696 | ||| ||||| Sbjct 26259 ATGTTTATCTTG 26270 >seq3863 Length=144211 Score = 105 bits (116), Expect = 5e-18 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || ||||| ||||||||||| || || | ||| ||||||| Sbjct 119961 ACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCACTCAA-GGTGCGAC 120019 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||| || || | || | | ||| ||||| || |||||||| || | Sbjct 120020 CATCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATACCTTCCT 120079 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 ||||||| | ||||| |||||| | || | |||||||| Sbjct 120080 TGTCTTGAATCTTTTGCTTGACATTGTCAATGGTGTCAGA 120119 >seq2553 Length=14598 Score = 93.3 bits (102), Expect = 3e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| |||||||| ||||||||||| || || | ||| || ||| Sbjct 8210 ACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCGCTCAA-AGTACGAC 8152 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || | |||||| || || | || | | ||| || || || |||||||| || | Sbjct 8151 CGTCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCT 8092 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 ||||||| | ||||| |||||| | || | |||||||| Sbjct 8091 TGTCTTGAATCTTTTGCTTGACATTGTCAATGGTGTCAGA 8052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385197763273806