Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq2352 86.0 8e-12 seq3189 84.2 3e-11 seq2345 84.2 3e-11 seq4547 82.4 1e-10 seq2679 82.4 1e-10 seq1977 82.4 1e-10 seq754 82.4 1e-10 >seq2352 Length=4865 Score = 86.0 bits (94), Expect = 8e-12 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 139346 CCCACAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTA 139405 |||| ||||| || |||||| | |||||||||||||||| | |||| |||||||| | Sbjct 2494 CCCA-AACTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTC 2552 Query 139406 ACCACTATACTAACGAGGATTTTGGTA 139432 |||||||||||| ||| ||||||| || Sbjct 2553 ACCACTATACTACCGAAGATTTTGTTA 2579 >seq3189 Length=8009 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 139349 ACAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACC 139408 ||||||| || |||||| | |||||||||||||||| | |||| |||||||| | ||| Sbjct 7079 ACAACTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 7138 Query 139409 ACTATACTAACGAGGATTT 139427 ||||||||| ||| ||||| Sbjct 7139 ACTATACTACCGAAGATTT 7157 >seq2345 Length=5455 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11721 GTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGG 11779 |||||| | || ||| |||||||||||| ||||| |||| ||||| | |||||||||||| Sbjct 426 GTAACCAAATCTTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGG 485 Query 11780 GTTCGATTCCCCGACG 11795 |||| |||||||| || Sbjct 486 GTTCAATTCCCCGCCG 501 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 139349 ACAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACC 139408 || |||| || |||||| | |||||||||||||||| | |||| |||||||| | ||| Sbjct 510 ACGACTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 451 Query 139409 ACTATACTAACGAGGATTTTGGTAC 139433 ||||||||| ||| ||||| | ||| Sbjct 450 ACTATACTACCGAAGATTTGGTTAC 426 >seq4547 Length=1280 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 || ||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 802 TCTTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 743 Query 8718 CCCGACGAGGAGCAG 8732 |||| || ||| || Sbjct 742 CCCGCCGGAGAGTAG 728 >seq2679 Length=5440 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 139348 CACAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAAC 139407 ||| |||| || |||||| | |||||||||||||||| | |||| |||||||| | || Sbjct 2862 CACTACTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 2921 Query 139408 CACTATACTAACGAGGATTT 139427 |||||||||| ||| ||||| Sbjct 2922 CACTATACTACCGAAGATTT 2941 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 || ||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 2938 TCTTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 2879 Query 8718 CCCGACGAGGAGCAG 8732 |||| || ||| || Sbjct 2878 CCCGCCGGAGAGTAG 2864 >seq1977 Length=1495 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||| ||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 374 TTCTTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 433 Query 8717 CCCCGACG 8724 ||||| || Sbjct 434 CCCCGCCG 441 >seq754 Length=772 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||| ||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 154 TTCTTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 213 Query 8717 CCCCGACG 8724 ||||| || Sbjct 214 CCCCGCCG 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652807538883040