Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2614 107 2e-18 seq1352 98.7 1e-15 seq2553 82.4 7e-11 >seq2614 Length=127402 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || || |||||||| | || || ||| | || ||||||||||| || Sbjct 59153 GTGGATTCCTTTTGAATGTTGTAATCACTCAAAGTACGACCA-TCTTCGAGCTGCTTACC 59095 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||| || ||||| || ||||||||||| ||||||||||| Sbjct 59094 AGCAAAGATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTT 59035 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | || | | || || || | ||| | |||||| || || || || Sbjct 59034 GACGTTCTCAATACTATCAGAAGATTCGACTTCCAAGGTAATGGTTTTACCAGTAAGGGT 58975 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 58974 TTTGACGAAAATCTGCAT 58957 >seq1352 Length=65141 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || || ||||| || | || ||| ||| ||| || | || || || Sbjct 15554 GTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACC-GTCTTCCAATTGTTTACC 15612 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| || ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 15613 AGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCTTGAATCTTTTGCTT 15672 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | || | | ||| || || | |||| ||| || || |||| ||| Sbjct 15673 GACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTCTTACCAGTCAAAGT 15732 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 15733 CTTGACGAAAATTTGCAT 15750 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || || ||||| || | || ||| ||| ||| || | || || || Sbjct 16010 GTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACC-GTCTTCCAATTGTTTACC 16068 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| || ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 16069 AGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCTTGAATCTTTTGCTT 16128 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | || | | ||| || || | |||| ||| || || |||| ||| Sbjct 16129 GACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTCTTACCAGTCAAAGT 16188 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 16189 CTTGACGAAAATTTGCAT 16206 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || || | || | ||||| || || ||||| ||||| |||||| Sbjct 15368 TCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTG 15427 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||||||||| | ||||| | || | | ||| || || | |||| | Sbjct 15428 TCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATG 15487 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || |||| ||| || || ||||| ||||| Sbjct 15488 GTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15522 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || || | || | ||||| || || ||||| ||||| |||||| Sbjct 15824 TCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTG 15883 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||||||||| | ||||| | || | | ||| || || | |||| | Sbjct 15884 TCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATG 15943 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || |||| ||| || || ||||| ||||| Sbjct 15944 GTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15978 >seq2553 Length=14598 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | |||||| || || || || ||||| |||| || || |||| ||| || | Sbjct 8200 AAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCGCTCAAAGT--ACGACCGTCTTCTA 8143 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 || || || ||| ||||||| || || ||||| ||||| || ||||||||||| | Sbjct 8142 ATTGTTTACCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAA 8083 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTC 133600 |||||||||||| | |||| ||||| Sbjct 8082 TCTTTTGCTTGACATTGTCAATGGTGTC 8055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483393208757840