Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2429 105 2e-17 seq2389 96.9 8e-15 seq3946 93.3 1e-13 seq3028 93.3 1e-13 seq2767 89.7 1e-12 seq3967 84.2 5e-11 >seq2429 Length=29321 Score = 105 bits (116), Expect = 2e-17 Identities = 177/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 ||||||| | |||||| || | |||||| || | || ||| ||| || |||| Sbjct 15627 AAAATGGAAAGTGGTCCCTGTTCTGTCCTGATGAAGCACCCGGTTTATGGGACTCTTATG 15686 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA 111018 | || ||||||| | |||||| ||| || ||||| ||||| || | | ||| || Sbjct 15687 GTGAAAAGTTTGATGCTCTTTACATAAAGTACGAAAACGAAGGTAAAGCTAGAAAAACAA 15746 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 || |||||| ||||||||||| || || ||| ||||| ||||||||||| || | Sbjct 15747 TTGAGGCTCAAAAACTTTGGTTCGCCATTCTGGAAGCACAAACTGAAACTGGAATGCCCT 15806 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 | || | || |||||| |||| ||||| || |||| ||| | || ||||||| Sbjct 15807 ACATGCTCTACAAAGATGCCTGTAATGAAAAATCAAACCAAAAGAACCTCGGCACAATTA 15866 Query 111139 AGTCTAGTAATTTGTG 111154 || ||||||||| Sbjct 15867 CTTCATCTAATTTGTG 15882 Score = 89.7 bits (98), Expect = 1e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 113256 AAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCAGATCGTGGCAAG 113315 |||||| | ||||||||| |||| | | | ||||||||||| || || ||||| Sbjct 16748 AAGACTGTGTGGGAAATTTCGCAAAGAACCATTATTGATATGGCGGCTGACCGTGGTGCC 16807 Query 113316 TTTATCGATCAATCTCAGTCGATGAACTTATTTA-TGCCGGACACCTCACCAGATAAGGT 113374 | ||| ||||| ||||| |||||||||||||| | ||||| || | || ||| | Sbjct 16808 TATATTGATCAGTCTCAATCGATGAACTTATTCACTGCCGAACCAAGTTTCGGA-AAGTT 16866 Query 113375 GACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTATGTATTATTTG 113432 ||| ||| | || || | ||||| ||||| ||||| || || ||||| |||||| Sbjct 16867 GACTTCTATGCATTTCTATGCTTGGAAGAAAGGATTAAAGACGGGCATGTACTATTTG 16924 >seq2389 Length=30206 Score = 96.9 bits (106), Expect = 8e-15 Identities = 199/291 (68%), Gaps = 9/291 (3%) Strand=Plus/Minus Query 113160 ATCGGTAAATGGAACAATGAAGTGAAAAACTCCATTATTGCTAATCAAGGTTCGGTTCAA 113219 || |||| |||||| ||||||| || ||| || || || || || || |||||| Sbjct 11762 ATGGGTATCTGGAACGATGAAGTCAAGAACATGATCATGGCCGATGGTGGATCTGTTCAA 11703 Query 113220 CATCTA---AAATTGCCTGATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAG 113276 || || | | | ||| | | | ||||| | | |||||| ||||||||||| Sbjct 11702 AATGTACCCACAATTCCTCAACACCTCAAAGAGCTCTACAAGACTGTTTGGGAAATTTCT 11643 Query 113277 CAACGTGTCGTAATTGATATGGCTGCAGATCGTGGCAAGTTTATCGATCAATCTCAGTCG 113336 |||||| | |||||||||| || || |||||| | || |||||| ||| Sbjct 11642 CAACGTACAATTGTTGATATGGCCGCTGACCGTGGCGCCTACATTGATCAAAGTCAAAGT 11583 Query 113337 ATGAACTTATTTATGCCGGACACCTCACCA-GATAAGGTGACA--TCTGCTCTATTTTAC 113393 ||||| | ||||| | || ||| || | |||| ||||| | ||| || | || Sbjct 11582 TTGAACATCTTTATTGCTGA-ACCCAACTTTGGTAAGCTGACAAGTATGCACT--TCTAT 11526 Query 113394 GGCTGGAAAAAAGGTTTAAAAACAGGTATGTATTATTTGCGAACACGTCCT 113444 || ||| |||| || || || || ||||||||||||||||| ||||||||| Sbjct 11525 GGTTGGCAAAAGGGATTGAAGACGGGTATGTATTATTTGCGTACACGTCCT 11475 >seq3946 Length=52427 Score = 93.3 bits (102), Expect = 1e-13 Identities = 252/381 (66%), Gaps = 15/381 (4%) Strand=Plus/Minus Query 131804 AAAGCAGAATGGGCTATTAAATGGATTCAAG---ATGATTCCGCTAATTTTTCTACAAGA 131860 || || || |||||| | ||||||||| | |||||||| ||| || | Sbjct 26522 AAGGCTGACTGGGCTTTCAAATGGATTTCTGCTAATGATTCC------TTTGCTGAGCGT 26469 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 ||||| ||||||||| || ||||||||||||||||| || | || | |||| ||| Sbjct 26468 CTTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCCGGCTCATTTGCTTCTATTTTT 26409 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||||||||| ||||| |||||||| || | | || ||| |||| || | | Sbjct 26408 TGGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAATGAATTGATTTGTCGT 26349 Query 131981 GATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTT 132040 || |||| | ||||| || || ||| | | | || | || | | ||| | Sbjct 26348 GACGAAGGTCTTCATACCGATTTCGCTTGTCTTTTGTTTACTCATATTCGTAAACAACCT 26289 Query 132041 GATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATT 132100 || | | | || | |||||| ||||| || | || || | || || | Sbjct 26288 AGCCAACAACGTGTGAAGGATATTATAATGGAAGCTGTAGGCATTGAACAAGAATTCTTA 26229 Query 132101 ACAGAAGCTTTGCC--TTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAGTAC 132157 || || || || || ||||| |||||||| |||||| || ||| | ||| | ||| Sbjct 26228 ACCGATGCATTACCTGTTGCA--TTGATTGGTATGAATTCT-ACTTTGATGTGTCAATAC 26172 Query 132158 ATTGAATTCGTTGCTGATCGT 132178 ||||||||||||||||||||| Sbjct 26171 ATTGAATTCGTTGCTGATCGT 26151 >seq3028 Length=170512 Score = 93.3 bits (102), Expect = 1e-13 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| || || || || | ||||| || || || | | ||||||| ||||| Sbjct 164364 GATAATGATGTTGTCCTCTTTAACCGTCAACCTTCCCTTCACAGATTGTCTATCATGGCA 164305 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT 305437 || | ||| || | || | ||||| || || || | | | | ||| ||||| Sbjct 164304 CACTTTGCCAAGGTTATGCCTTGGAGAACATTCCGTTTCAACGAATGCGTATGTTCGCCT 164245 Query 305438 TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||| ||||||||||| |||||||||||||||||| |||| ||| || Sbjct 164244 TATAATGCCGATTTTGATGGTGATGAAATGAATATGCATTTACCACAAACA 164194 >seq2767 Length=51584 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| | ||||| | ||| ||| | ||||| | ||||| ||||| || |||||| Sbjct 12440 AGACATATTAATGATGACGATGTTGTTATCTTCAACCGTCAACCTTCACTTCACAAAATG 12381 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 || ||||||| |||| ||||| || | | | || || || |||||| || Sbjct 12380 TCAATGATGGGTCATCGTGTCAAGGTTATGCCATACTCTACTTTCCGTTTAAATCTATCG 12321 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | ||||||||||| |||||||| || |||||||||||| | || || || ||| Sbjct 12320 GTTACATCCCCTTATAATGCTGATTTTGACGGTGATGAAATGAATCTTCACGTTCCCCAA 12261 Query 305486 TC 305487 || Sbjct 12260 TC 12259 >seq3967 Length=161347 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 167179 TTTTTGATTATCTTTTTTATCGAAATATTTCAAAAGAGCACCTAAAATCTTTATTAATTA 167238 |||||||| ||| | || | ||||| | |||||| ||| | || || || | Sbjct 99794 TTTTTGAT-ATCATAATTGT--AAATACCTGAAAAGAACACATTAATGATTCATCTACAC 99850 Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | | |||| |||||||| |||||| | || ||||| || || || |||| || Sbjct 99851 TCATCATAGCACCCGCATTATCAAATTCAC-CACAGTAATTCGGAGCAGAGAATAAGGTG 99909 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 |||| || | || ||| ||||||||||||||||||||||||| ||| ||||| Sbjct 99910 ACTAGTTGTCTCTTTGCAAAGAATTCATAACCATCTTCAACAACTTGATGAGCACG 99965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186743369225926