Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2600 118 7e-22 seq2841 116 2e-21 seq2614 95.1 8e-15 >seq2600 Length=207564 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| |||||||| |||||||| || || || |||||||| || |||||| Sbjct 124522 CCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTATATTATAATCGCTT 124463 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || | || || | |||||| || ||||| || | | || |||||| | || Sbjct 124462 AATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 124403 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| |||||| |||| |||| || | ||| ||| ||||| || Sbjct 124402 ATACCTTCTTTGTCTTGAATTTTACTTTTC-ACATTATCAATGGTATCGGAAGATTCAAC 124344 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| ||||| | || || ||||| || |||||| Sbjct 124343 TTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCATA 124295 >seq2841 Length=27215 Score = 116 bits (128), Expect = 2e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 33514 AAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTG 33573 ||| ||| |||||||| |||||||| |||||||| || || ||||||||||| ||| Sbjct 25423 AAACCGTTTCCACCTCTTAAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTG 25482 Query 33574 TAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGA 33633 ||||| | ||| || | || || | |||||| || |||||||| | | || ||| Sbjct 25483 TAATCACTTAATGTACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGA 25542 Query 33634 TCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTT 33693 || | || | ||||||||| || |||||| ||||| || | ||| ||| Sbjct 25543 TCGGGTGGGATACCTTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAG 25602 Query 33694 GATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || || | ||||| || || ||||| | || || |||||||| |||||| Sbjct 25603 GATTCAACTTCTAATGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 25659 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 33528 TCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGT 33587 ||| |||||||| ||||| || || || ||||||||||| |||||||| | ||| Sbjct 25671 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25730 Query 33588 GCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACC 33647 || | || || | |||||| || |||||||| | | || ||||| | || | ||| Sbjct 25731 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 25790 Query 33648 TTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAAC 33707 |||||| || |||||| ||||| || | ||| ||| ||||| || || | Sbjct 25791 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 25850 Query 33708 CGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || || ||||| | || || |||||||| |||||| Sbjct 25851 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 25893 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 33528 TCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGT 33587 ||| |||||||| ||||| || || || ||||||||||| |||||||| | ||| Sbjct 25905 TCTTAAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGT 25964 Query 33588 GCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACC 33647 || | || || | |||||| || |||||||| | | || ||||| | || | ||| Sbjct 25965 ACGACCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACC 26024 Query 33648 TTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAAC 33707 |||||| || |||||| ||||| || | ||| ||| ||||| || || | Sbjct 26025 TTCTTTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAA 26084 Query 33708 CGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| || || ||||| | || || |||||||| |||||| Sbjct 26085 TGTGATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 26127 >seq2614 Length=127402 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| || ||||| |||||||| || || Sbjct 58956 ACCACCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGA 58897 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | |||||| || |||||||| | ||| || || ||| | || Sbjct 58896 AAGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAGG 58837 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || || || | ||| || | | | || ||||| | Sbjct 58836 AATACCTTCCTTGTCTTGGATCTTTTGCTTTA-CATTTTCGATGCTATCAGAAGATTCGA 58778 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||| | || ||||||||||| ||||| Sbjct 58777 CTTCTAAAGTGATAGTCTTTCCTGTAAGGGTCTTTACAAAGATTTGCAT 58729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328685708238720