Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2841 140 3e-28 seq2600 140 3e-28 seq2614 109 5e-19 seq2429 89.7 5e-13 >seq2841 Length=27215 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || || | ||||| | ||||| ||| || | Sbjct 25658 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 25599 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| |||||||| ||||| || |||||||| Sbjct 25598 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 25539 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || |||||||| ||||| | | | | | || ||||||||| Sbjct 25538 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAAT 25479 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || ||||||||||| || ||||||| || ||| | || ||||| ||||| Sbjct 25478 ATACAAAAAGAATCAACGCTTCATTTGGTATTACGTTTAAGAGGTGGAAA 25429 Score = 125 bits (138), Expect = 6e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || || | ||||| | ||||| ||| || | Sbjct 25892 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 25833 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| |||||||| ||||| || |||||||| Sbjct 25832 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 25773 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || |||||||| ||||| | | | | | || ||||||||| Sbjct 25772 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAAT 25713 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 || ||||||||||| || |||| || || ||| | || ||| Sbjct 25712 ATACAAAAAGAATCAACGCTTCAATTGGTATTACGTTTAAGA 25671 Score = 125 bits (138), Expect = 6e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || || | ||||| | ||||| ||| || | Sbjct 26126 ATGCAAATCTTTGTCAAGACTCTTACAGGCAAGACAATCACATTAGAAGTTGAATCCTCC 26067 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| |||||||| ||||| || |||||||| Sbjct 26066 GATACCATTGATAACGTGAAAAGCAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 26007 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || |||||||| ||||| | | | | | || ||||||||| Sbjct 26006 CAAAGACTAATTTTTGCTGGTAAACAACTTGAAGAGGGTCGTACATTAAGTGATTACAAT 25947 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 || ||||||||||| || |||| || || ||| | || ||| Sbjct 25946 ATACAAAAAGAATCAACGCTTCAATTGGTATTACGTTTAAGA 25905 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 |||||| | ||||| || |||||||| |||||||| |||| | || |||||||| ||| Sbjct 26267 GATAAACATGGTATCCCACCCGATCAACAAAGACTAATTTTTGCTGGTAAACAACTTGAA 26208 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || | | | | | || ||||||||||| ||||||||||| || |||| || || ||| Sbjct 26207 GAGGGTCGTACATTAAGTGATTACAATATACAAAAAGAATCAACGCTTCAATTGGTATTA 26148 Query 25388 AGATTGAGA 25396 | || ||| Sbjct 26147 CGTTTAAGA 26139 >seq2600 Length=207564 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || ||| | ||||| | ||||| ||| | Sbjct 124068 ATGCAAATTTTTGTCAAGACCCTTACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 124127 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||| |||||| | ||||| ||||| ||| ||||| || ||||| || || ||||| Sbjct 124128 GATAGTATCGATAACGTAAAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 124187 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | | ||||||||| | ||||||| | | | | |||| || || ||| Sbjct 124188 CAACGTCTCATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACTCTCAGTGACTATAAT 124247 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||| || ||||||||||| ||||||| |||| || Sbjct 124248 ATTCAAAAGGAATCAACTCTTCATTTAGTGCTAAGATTACGAGGTGG 124294 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || ||| | ||||| | ||||| ||| | | Sbjct 124296 ATGCAAATATTTGTCAAGACTCTTACAGGCAAAACAATCACATTAGAAGTTGAATCTTCC 124355 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| || ||||| ||||| || || ||||| Sbjct 124356 GATACCATTGATAATGTGAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 124415 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | | ||||||||||| ||||||| | | | | |||||||| ||| Sbjct 124416 CAAAGACTTATCTTTGCTGGCAAACAACTAGAAGATGGTCGTACATTAAGCGATTATAAT 124475 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || ||||| ||||| || | ||||| || ||| | || ||||| ||||| Sbjct 124476 ATACAAAAGGAATCAACACTCCATTTGGTATTACGTTTAAGAGGTGGAAA 124525 >seq2614 Length=127402 Score = 109 bits (120), Expect = 5e-19 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 25164 AATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAG 25223 ||||| | ||||||||| | |||||||| || | || ||||| | ||||| | |||| Sbjct 58719 AATTATA-AACATGCAAATCTTTGTAAAGACCCTTACAGGAAAGACTATCACTTTAGAAG 58777 Query 25224 TCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATAC 25283 ||||| | |||| ||||| | ||||| ||||| || || || || ||||| | Sbjct 58778 TCGAATCTTCTGATAGCATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGTATTC 58837 Query 25284 CGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGT 25341 | || || || ||| | ||||||| | || |||||||||||||||| | | | | | Sbjct 58838 CTCCAGACCAACAACGTCTCATTTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTTT 58897 Query 25342 CAGCGATTACAATATTCAAAAAGAATCCAC 25371 || || ||||| |||||||| |||||||| Sbjct 58898 CA--GACTACAACATTCAAAAGGAATCCAC 58925 >seq2429 Length=29321 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 136663 GCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTTAAACCCTTCTCCCAGGAATAATTA 136722 || ||| ||| |||| ||||||||||||||||||||| || |||| ||| | ||| | Sbjct 16938 GCGGGTCTAGACCTCAAATAGTACATGCCCGTCTTTAATCCTTTCTTCCAAGCATAGAAA 16879 Query 136723 TGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACGAAAAGATTTAGCGATTGGCTC 136782 || ||||| | ||| || | || || ||||| ||| | || | |||||| | Sbjct 16878 TGCATAGAAGTCAACTTTCCGAAACTTGGTTCGGCAGTGAATAAGTTCATCGATTGAGAC 16819 Query 136783 TGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAGTACTT-TTTGCTTAATTTC 136841 ||||| || || | || ||||| || ||||| |||||| | || ||||| |||||| Sbjct 16818 TGATCAATATAGGCACCACGGTCAGCCGCCAT-ATCAATAATGGTTCTTTGCGAAATTTC 16760 Query 136842 CCAAGCGGTTTTAAAGAGCTCCTTGA 136867 ||| | || || | | ||||||| Sbjct 16759 CCACACAGTCTTGTACAATTCCTTGA 16734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445068996237120