Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3625 116 5e-20 seq4556 100 4e-15 seq2710 98.7 1e-14 seq3105 89.7 7e-12 >seq3625 Length=93257 Score = 116 bits (128), Expect = 5e-20 Identities = 173/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||| | ||||| || ||||| || | | ||| Sbjct 85075 TACTCTTCTTACATCTACAAGGTCTTGAAGCAAGTTCACCCTGACACTGGT-----ATC- 85128 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| ||||||| || |||||||| || | || || |||| | Sbjct 85129 TCCAACAAGGCCATGTCTATCTTGAACTCCTTCGTCAACGATATCTTTGAACGTATCGCC 85188 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | || ||| |||| || ||||||||| ||| ||| | || || ||| Sbjct 85189 TCTGAAGCCTCCAAGTTGGCCGCCTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATC 85248 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || |||||||| || || ||| | | ||| ||||| |||| |||||||||||| || || Sbjct 85249 CAAACCGCCGTTCGTCTCATCCTTCCCGGTGAACTCGCCAAGCACGCCGTCTCTGAAGGT 85308 Query 725139 ACCA 725142 |||| Sbjct 85309 ACCA 85312 >seq4556 Length=51470 Score = 100 bits (110), Expect = 4e-15 Identities = 114/149 (77%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 |||||| || || || |||| ||||||||| ||||| |||||||| || || ||| || Sbjct 10033 CTTTGCTGAACGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCTGGCTCATT 9974 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 | | ||||||||||| | ||||| || || | ||||||||| || |||||| || | Sbjct 9973 CGCCTCCATCTTTTGGTTAAAGAAACGTGGTTTGATGCCCGGT-TTGACCTTTAGTAATG 9915 Query 1456291 AATTTATCAGTCGCGACGAA-GTTTTCAC 1456318 |||| ||| |||| || ||| || ||||| Sbjct 9914 AATTGATCTGTCGTGATGAAGGTCTTCAC 9886 Score = 87.8 bits (96), Expect = 3e-11 Identities = 205/298 (69%), Gaps = 11/298 (4%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTC-GTCAACAAGCC-GTCG 1456504 |||| | ||| ||||||||||||||| | | ||| || || ||||| || ||| Sbjct 9895 AGGTCTTCACACTGACTTTGCCTGTCTCTTGTTCACCCACATCCGTAAACAACCCAGTCA 9836 Query 1456505 ACCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTT--TGTCA 1456562 || ||| | | ||| | ||||| || || ||||||| ||||| |||| || |||| Sbjct 9835 ACA-ACGCGTC-AAGGACATCATTGTAGAAGCCGTCGGTATCGAACAAGAATTCCTGTCG 9778 Query 1456563 GCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATT 1456622 | | | ||||| || || | ||||| |||||||| ||| | ||||| ||||| || Sbjct 9777 G--ATGCTCTGCCTGTTGCATTGATCGGTATGAACGCTACCT-TGATGTGTCAGTATATC 9721 Query 1456623 GAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG 1456682 ||||| ||||| || || || | | || || || | || | ||| ||| | Sbjct 9720 GAATTC-GTCGCTGATCGTCTCATGGTCGCTCTTGGATTCG-ACAAGATTTACAATGCTA 9663 Query 1456683 CCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGA 1456740 | ||||| ||| | ||||| ||||||| || | ||||||||||||||||| || Sbjct 9662 CTAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGCAAGACCAACTTTTTTGA 9605 >seq2710 Length=94120 Score = 98.7 bits (108), Expect = 1e-14 Identities = 169/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||| | ||||| || |||||| || | | ||| Sbjct 55217 TACTCCTCTTATATCTACAAGGTCTTGAAGCAAGTTCACCCCGATACTGGT-----ATC- 55164 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| ||||||| || ||||| || || | || || || | Sbjct 55163 TCCAACAAGGCCATGTCCATCTTGAACTCCTTCGTCAATGATATCTTTGAACGTATTGCT 55104 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | || ||| |||| || ||||||||| ||| ||| | || || ||| Sbjct 55103 TCTGAAGCCTCCAAGTTGGCTGCCTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATC 55044 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || ||||| || || || || | | || ||||| |||| |||||||||||| || || Sbjct 55043 CAAACCGCTGTTCGTCTTATTCTTCCTGGTGAACTCGCCAAGCACGCCGTCTCTGAAGGT 54984 Query 725139 ACCA 725142 |||| Sbjct 54983 ACCA 54980 Score = 98.7 bits (108), Expect = 1e-14 Identities = 169/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||| | ||||| || |||||| || | | ||| Sbjct 70105 TACTCCTCTTATATCTACAAGGTCTTGAAGCAAGTTCACCCCGATACTGGT-----ATC- 70158 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| ||||||| || ||||| || || | || || || | Sbjct 70159 TCCAACAAGGCCATGTCCATCTTGAACTCCTTCGTCAATGATATCTTTGAACGTATTGCT 70218 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | || ||| |||| || ||||||||| ||| ||| | || || ||| Sbjct 70219 TCTGAAGCCTCCAAGTTGGCTGCCTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATC 70278 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || ||||| || || || || | | || ||||| |||| |||||||||||| || || Sbjct 70279 CAAACCGCTGTTCGTCTTATTCTTCCTGGTGAACTCGCCAAGCACGCCGTCTCTGAAGGT 70338 Query 725139 ACCA 725142 |||| Sbjct 70339 ACCA 70342 >seq3105 Length=181656 Score = 89.7 bits (98), Expect = 7e-12 Identities = 168/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||| | ||||| || ||||| || ||| || | Sbjct 45840 TACTCTTCTTACATCTACAAGGTCTTGAAGCAAGTTCACCCTGATAC---TGG--TAT-C 45893 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||||| ||| ||||||| || ||||| || || | || || || | Sbjct 45894 TCTAACAAGGCCATGTCCATCTTGAACTCCTTCGTCAATGATATCTTTGAACGTATTGCT 45953 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | || ||| |||| || ||||||||| ||| ||| | || || ||| Sbjct 45954 TCTGAAGCCTCCAAGTTGGCTGCCTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATC 46013 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || ||||| || || || ||| | | || ||||| |||| ||||||||| || || ||| Sbjct 46014 CAAACCGCTGTTCGTCTTATCCTCCCTGGTGAACTCGCCAAGCACGCCGTTTCTGAAGGC 46073 Query 725139 ACCA 725142 |||| Sbjct 46074 ACCA 46077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177370800907692