Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3946 178 2e-39 seq4556 167 3e-36 seq3345 159 5e-34 >seq3946 Length=52427 Score = 178 bits (196), Expect = 2e-39 Identities = 480/726 (66%), Gaps = 14/726 (2%) Strand=Plus/Minus Query 161200 TCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAAC 161259 |||||| ||||| || || || |||||||||| | | |||||||| || || Sbjct 15704 TCATGTCAAAGTTTCCTTTGACATGTCTGAATATACTGGTGACGTCGATGCTCTTGGTAC 15645 Query 161260 CCTAAGAGTATTGGAGGCAGTTCGT-CTCCTAGGTATGACAGATAGGGTCCGTATCTACC 161318 || | |||| || || | ||| || | ||| | | || | |||||| |||||| Sbjct 15644 ACTTCGTTTATTAGATGCCATCCGTACTTGT-GGTTTAGCTGACCGAGTCCGTTTCTACC 15586 Query 161319 AGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACAC 161378 | || || ||| ||| | || || ||| ||||| || || || ||||| || | Sbjct 15585 AAGCTTCTACCTCTGAACTTTACGGTAAGGTCGTGGAGACTCCTCAAAAGGAAACCACGC 15526 Query 161379 CTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGAT---TGTAA 161435 | ||||| || |||||||| ||||| || || ||||||||||| || ||||| ||||| Sbjct 15525 CCTTCTATCCTCGATCTCCTTATGGTGTTGCCAAACTCTATGGCTACTGGATCACTGTAA 15466 Query 161436 AGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGT 161495 | |||| | ||| || | ||| | || | | |||||| || |||||||| || | Sbjct 15465 A---CTACCGTGAGTCCTACGATATGTATGCTTGCAATGGTATCCTTTTCAACCACGAAT 15409 Query 161496 CACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTA 161555 |||| || || ||| || || ||||||||||| ||||| | | | || |||| Sbjct 15408 CACCTCGTCGTGGTCGTACCTTTGTAACCCGTAAAATTACCCGTGCTGTGGCCGATATTC 15349 Query 161556 GTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTC 161615 || | || |||||||| || || ||||| | | | | ||| |||||||| | Sbjct 15348 ACTTGGGCCGTCAAGATTGTCTTTATCTGGGTAACATTGATGCCAAACGTGATTGGGGAC 15289 Query 161616 ATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACT 161675 ||||| |||||||| |||| ||||||| | ||| | || || |||| ||| | || | Sbjct 15288 ATGCTCGTGACTATGTAGAGGGTATGTGGCTCATGCTTCAGCAAGAAAAGCCTCAAGATT 15229 Query 161676 ATGTGATTGCCACAGGTAAAGAGTATTCAGT--GAAGGACT-TTGTAGAGGCATCTGCTG 161732 || | ||||||||| || || | || |||| | ||| | |||||| | | Sbjct 15228 TCGTCCTAGCCACAGGTGAAACACATACTGTAAGAAGTTTTGTTGAAAAGGCAT-TTAAG 15170 Query 161733 AATACTTTGGTATGAAGATTGAGTGGCAGGGTGAAGGATTGGATGAAGTGGGTATAGATA 161792 ||| ||| | |||| ||| | || ||||| || |||| | |||| ||| Sbjct 15169 GTTAC--TGGACGTACTATTGTTTGGGAAGGCGAAGGTGTGAATGAGATTGGTAAAGACG 15112 Query 161793 GATTTACAAAGAAGGTTGTCGTTCGTGTGAGTGACAAATACTTCAGACCAGCAGAGGTTG 161852 ||| ||||| || || | | ||||||||| | || || || |||| Sbjct 15111 CTGAGACAGGTAAGGTGCGTGTGCGCATCGATCCCAAATACTTTCGTCCTGCCGAAGTTG 15052 Query 161853 AAACTCTCTGGGGTGATCCCACTAAGGCTAAAGAGGTATTGGGTTGGAAACCTAAGCATA 161912 | | | | ||||||||| || ||||| || | |||||||||||||| |||| || Sbjct 15051 ATCTTTTGTTGGGTGATCCTACAAAGGCCAACACTGAATTGGGTTGGAAACGTAAGGTTA 14992 Query 161913 CCTTTG 161918 | |||| Sbjct 14991 CTTTTG 14986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 160976 GGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAGAAGGGGTATGAA 161035 ||| | ||||| || || || || ||| | | |||| |||| || | || || |||||| Sbjct 16006 GGTGTCACTGGTCAAGACGGCTCTTATTTAGTTGAATTTCTGCTAGAAAAAGGATATGAA 15947 Query 161036 GTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATCGATCATATCT 161093 || |||||||||||||||||| |||| || ||||||||||| | || || || |||| Sbjct 15946 GTACATGGTATTATTCGTAGATCCTCTTCTTTTAATACAGGCCGTATTGAGCACATCT 15889 >seq4556 Length=51470 Score = 167 bits (184), Expect = 3e-36 Identities = 325/480 (68%), Gaps = 0/480 (0%) Strand=Plus/Plus Query 161200 TCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAAC 161259 |||||| || || || || || |||||||||||| | |||||||| || || Sbjct 5549 TCATGTCAAGGTTTCGTTTGACATGTCTGAATATACAGGCGATGTCGATGCTCTTGGTAC 5608 Query 161260 CCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTATGACAGATAGGGTCCGTATCTACCA 161319 || | ||||||| || | ||| | ||| | | || | ||||| | ||||| Sbjct 5609 ACTTCGTTTATTGGATGCCATCCGTACCTGTGGTTTAGCTGACCGAGTCCGATTTTACCA 5668 Query 161320 GGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACACC 161379 || || ||| |||| | || || ||| ||||| || || || || || ||||| Sbjct 5669 AGCCTCGACCTCTGAGCTTTACGGTAAGGTCGTCGAGACGCCTCAAAAGGAGACTACACC 5728 Query 161380 TTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTGTAAAGAA 161439 |||||||| || ||||| ||||| || || ||||||||||| || |||||| || Sbjct 5729 CTTCTACCCTCGTTCTCCTTATGGTGTGGCCAAACTCTATGGTTACTGGATTACGGTCAA 5788 Query 161440 CTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCACC 161499 |||| |||| ||| | ||| | ||| ||| |||||||| || |||||||| ||||| Sbjct 5789 CTACCGAGAATCTTACGACATGTATGCCTGTAACGGTATTCTGTTTAACCATGAATCACC 5848 Query 161500 ACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGTAC 161559 || || ||| || || || || || ||||| ||| | | || | |||| Sbjct 5849 CCGTCGTGGTCGTACCTTTGTCACTCGAAAGATCACTCGTGCTGTAGCTGATATTCACTT 5908 Query 161560 AGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATGC 161619 || | || || ||||| || || ||||| | || | | ||| |||||||| ||||| Sbjct 5909 GGGTCGTCAAGAATGTCTTTATCTGGGTAACATTGACGCCAAACGTGATTGGGGACATGC 5968 Query 161620 TGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATGT 161679 | ||||||||||||| ||||||| | ||| | || || || | ||| | || | ||| Sbjct 5969 TCGTGACTATGTGGAGGGTATGTGGCTCATGCTTCAGCAAGATAAGCCTCAAGATTTTGT 6028 >seq3345 Length=10527 Score = 159 bits (176), Expect = 5e-34 Identities = 355/530 (67%), Gaps = 2/530 (0%) Strand=Plus/Minus Query 161167 ACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACC 161226 |||| ||| |||||||| ||| || || |||||| ||||| || || || | Sbjct 4146 ACCTACTGAAATCTACAATTTAGCAGCTCAATCTCATGTCAAAGTGTCCTTTGACATGTC 4087 Query 161227 TGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGT-C 161285 |||||||| | | |||||||| || || || | | ||||| || ||||| | Sbjct 4086 CGAATATACTGGTGATGTCGATGCTCTCGGCACACTTCGTCTCTTGGACGCCATTCGTAC 4027 Query 161286 TCCTAGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGT 161345 | | ||| | || ||| | || || ||||||| || ||||| ||| | || || Sbjct 4026 TTGT-GGTTTAACCGATCGAGTTCGCTTCTACCAAGCCTCCACTTCTGAACTTTACGGTA 3968 Query 161346 TGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCG 161405 || || ||||| || || ||||| ||||||||||| || || ||||| || || | Sbjct 3967 AAGTTGTCGAAACACCTCAAAAGGAAACCACACCTTTCTATCCTCGTTCTCCTTACGGTG 3908 Query 161406 TAGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACG 161465 | || || |||||||| || |||||||| ||||| | || || | |||| | Sbjct 3907 TCGCCAAGCTCTATGGTTACTGGATTGTTGTCAACTATCGTGAATCGTACGAGATGTATA 3848 Query 161466 CCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCC 161525 || ||| ||||| || ||||||||||| ||||| || || ||| || || || || | Sbjct 3847 CCTGTAACGGTATCCTCTTCAACCATGAATCACCTCGTCGTGGTCGTACCTTTGTTACTC 3788 Query 161526 GTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAG 161585 | ||||| || | | || | ||| | ||||| || || ||||| ||| | | Sbjct 3787 GCAAGATCACACGTGCTGTAGCTGATATCCATTTAGGACGTCAAGACTGTCTTTACTTGG 3728 Query 161586 GTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGT 161645 ||||| | | | | || |||||||| |||||| || ||||| || | |||||| Sbjct 3727 GTAATATTGATGCCAAGCGTGATTGGGGACATGCTCGTGATTATGTTGAAGGCATGTGGC 3668 Query 161646 TGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAA 161695 | ||| | || || |||| ||| | |||| ||| | || |||||| || Sbjct 3667 TCATGCTCCAGCAAGAAAAGCCTCAAGACTTTGTCTTGGCTACAGGTGAA 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729887939268080