Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3946 223 3e-53 seq4556 172 4e-38 seq2418 141 7e-29 >seq3946 Length=52427 Score = 223 bits (246), Expect = 3e-53 Identities = 402/579 (69%), Gaps = 33/579 (6%) Strand=Plus/Minus Query 44069 ATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAA 44128 ||||| | ||| || |||||||| | |||||||| | | |||||||| |||| || Sbjct 26531 ATTAAGCGTAAGGCTGACTGGGCTTTCAAATGGATTTCTGCTAATGATTCCTTTGCTGAG 26472 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 || ||||| || ||||| | || ||||| || |||||||| || || ||||| | || Sbjct 26471 CGTCTTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCCGGCTCATTTGCTTCTATT 26412 Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGT 44248 |||||| | |||||||| ||||||||||| || ||||| ||| ||||| || || || Sbjct 26411 TTTTGGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAATGAATTGATTTGT 26352 Query 44249 CGTGATGAAGGCTTACATTGCGATTTTGCTTG-CTT---GTTACTTGGATATCTAGGAGA 44304 ||||| ||||| | ||| |||||| ||||| ||| ||||| |||| | | | | Sbjct 26351 CGTGACGAAGGTCTTCATACCGATTTCGCTTGTCTTTTGTTTACT--CATAT-TCGTAAA 26295 Query 44305 CGA-TAAGCCTTCA---TGT-AAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATA 44359 | | |||| || ||| ||| |||||| | | || || ||| || Sbjct 26294 CAACCTAGCCAACAACGTGTGAAG---------GATATTATAATGGAAGCTGTAGGCATT 26244 Query 44360 GAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTG 44419 ||||||||||| | || ||||||||||| || || || |||||| |||| Sbjct 26243 GAACAAGAATTCTTAACCGATGCATTACCTGTTGCATTGATTGGTATGAATTCTACTTTG 26184 Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGT-TTACTTTTGGAACTGGGTTGCGATAA 44478 ||| ||||| ||||||| | |||| |||||| ||| ||| |||||| |||||| Sbjct 26183 ATGTGTCAATACATTGAATTCGTTGCTGATCGTCTTATGGTTGCTCTTGGGTT-CGATAA 26125 Query 44479 ACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAAC 44538 | ||||| | | || |||||||| |||||||| | ||||| || |||| || || Sbjct 26124 AATTTATATGGCAACGAATCCGTTTGACTTTATGGATATGATTTCACTGCAAGGAAAGAC 26065 Query 44539 AAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAG--- 44595 |||||||||||||| |||||| || ||||| || || |||||| |||||| Sbjct 26064 CAACTTTTTTGAAAAGCGCGTTTCTGATTATCAACGTGCTGGTGTCATG--AACAAGACT 26007 Query 44596 -----TGACAATAAATTTACTACGGATGAAGATTTCTAA 44629 || || |||||||| ||||| ||||| ||| Sbjct 26006 CCTGTGGAGAAAAAATTTACATTGGATGCTGATTTTTAA 25968 Score = 113 bits (124), Expect = 4e-20 Identities = 209/299 (70%), Gaps = 11/299 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||| | || || || ||| | || || ||||||||||| |||||| | ||||| Sbjct 26931 ATTTGGCAATTCTATAAGAAGGCAGAAGCATCTTTTTGGACAGCTGAAGAAATAGATTTA 26872 Query 43790 ACTAAAGACTTAGCACATTGG-ATTGCATTAAAACC-ACAA-GAAAAACATTTTATATCT 43846 | || ||| | ||||| | || | || | || || | |||||| ||| Sbjct 26871 AGTAGAGATCAAAATGATTGGGAAAACAAAATGACTGAGAATGAGCGATTTTTTATTTCT 26812 Query 43847 TTGGTTTTGGCGTTTTTTGCTGCGAGC---GACGGGATAGTCAATGAAAATTTGGTT-AG 43902 |||||||| || ||||| ||| || || || || |||||||||||||| | Sbjct 26811 CGCGTTTTGGCTTTCTTTGCC---AGCTCTGATGGTATTGTAAATGAAAATTTGGTGCAA 26755 Query 43903 TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||| | | ||||| || | || ||||| |||||||||||| |||||||| Sbjct 26754 AACTTTTGTG-ATGAAGTCAAAATTCCTGAAGCTAAATGTTTTTATGGCTTTCAAATCAT 26696 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021 || ||||||||||| || |||| ||||||||| |||| ||||| || || ||||||| Sbjct 26695 GATTGAAAATATTCACTCAGAAACATACAGTCTTTTGATTGATACCTATATAAAAGATG 26637 >seq4556 Length=51470 Score = 172 bits (190), Expect = 4e-38 Identities = 392/579 (68%), Gaps = 33/579 (6%) Strand=Plus/Minus Query 44069 ATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAA 44128 ||||| | ||| ||||| |||||| | |||||||| || || || || |||| ||| Sbjct 10083 ATTAAGCGTAAGGCAGATTGGGCCTTCAAATGGATCTCATCCAACGAATCCTTTGCTGAA 10024 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 || || ||||| ||||| | ||| |||||||| |||||||| || || || || |||| Sbjct 10023 CGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCTGGCTCATTCGCCTCCATC 9964 Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGT 44248 ||||||||||||||||| ||||||||||| || ||||| ||| ||||| || || || Sbjct 9963 TTTTGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACCTTTAGTAATGAATTGATCTGT 9904 Query 44249 CGTGATGAAGG-CTT-ACATTGCGATTTTGCTTG---CTTGTTACTTGGATATCTAGGAG 44303 ||||||||||| ||| ||| | || ||||| || |||||| | | ||| Sbjct 9903 CGTGATGAAGGTCTTCACACT--GACTTTGCCTGTCTCTTGTT-CACCCACATC------ 9853 Query 44304 ACGATAAGCCTTCATGTAAGACAA----TTACAGATATTGTTGTAGAGGCAGTAAAGATA 44359 || ||| | | || | |||| | | || || ||||||| || || || Sbjct 9852 -CG-TAAACAACCCAGTCA-ACAACGCGTCAAGGACATCATTGTAGAAGCCGTCGGTATC 9796 Query 44360 GAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTG 44419 ||||||||||| || | || | ||||| || || || ||||| | ||| Sbjct 9795 GAACAAGAATTCCTGTCGGATGCTCTGCCTGTTGCATTGATCGGTATGAACGCTACCTTG 9736 Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAA 44479 ||| || ||||| |||| | | || |||||| | | | | || || | ||| || Sbjct 9735 ATGTGTCAGTATATCGAATTCGTCGCTGATCGTCTCATGGTCGCTCTTGGATTCGACAAG 9676 Query 44480 CACTATATTG-TACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAAC 44538 || | || ||| ||||| || || |||||||| | || || | ||||||| || Sbjct 9675 ATTTACAATGCTAC-TAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGCAAGAC 9617 Query 44539 AAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAG--- 44595 |||||||||||||| || ||| || ||||| || || |||||| |||||| Sbjct 9616 CAACTTTTTTGAAAAGCGTGTTTCTGATTATCAACGTGCTGGTGTCATG--AACAAGACA 9559 Query 44596 -----TGACAATAAATTTACTACGGATGAAGATTTCTAA 44629 ||| || | ||| ||| ||||| ||||| ||| Sbjct 9558 CCTGTTGAAAAGACATTCACTTTGGATGCTGATTTTTAA 9520 >seq2418 Length=25572 Score = 141 bits (156), Expect = 7e-29 Identities = 320/481 (67%), Gaps = 29/481 (6%) Strand=Plus/Minus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATG-A 40921 ||||||||||||||||| || ||||| || |||| | |||| |||||||| || || | Sbjct 14336 GAAGGTGATCTTGGTCCAGTCTATGGGTTCCAGTGGAGACACTTTGGAGCCAAGTACGTT 14277 Query 40922 CACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATAC 40981 | | || | |||| |||| | |||| || ||||| |||||| || |||||||| Sbjct 14276 GATTGTG-ATACTGACTATAGTGGTCAAGGCATTGATCAGTTACAGCAAGTGATAGATAC 14218 Query 40982 GATTAAATCCGATC---CCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGA 41038 |||||| ||| | |||| |||| || || | | || ||||| || | || Sbjct 14217 CATTAAAAATAATCCAACAGATA---GACGAATTATTCTCTCTGCTTGGAATCCTGCAGA 14161 Query 41039 CGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA---- 41094 | | | | ||||| || || ||||||||| || ||||||||||| |||| || Sbjct 14160 TATTCCTATAATGGCTTTACCTCCTTGTCATGCTTTTTGTCAGTTTTATGTTTCCAATCC 14101 Query 41095 --------ATGGTG---------AACTGTCATGTCAATTGTATCAAAGATCAGGTGACAT 41137 |||||| |||| || ||| | ||||| |||| | || || Sbjct 14100 GCCTTCAGATGGTGGACGTGCTAAACTATCTTGTGTGCTTTATCAGCGATCTTGCGATAT 14041 Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 ||| |||| || || ||||| || || ||||| || | || ||||||||||| Sbjct 14040 GGGGTTAGGTGTACCTTTTAATATTGCTTCCTATGCGCTCTTGACTCGCATGATTGCACA 13981 Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACAT 41257 ||| || |||| | ||||| |||||| | || || | || ||| |||| ||||||| Sbjct 13980 CGTAACAGATTTGGATCCTGGAGAATTTATACATACTATGGGTGATACACATGTTTACAT 13921 Query 41258 TAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCT 41317 | ||||| | || | || | | | ||| | |||| | ||||| | || ||||| || Sbjct 13920 TGATCACTTGGATGCATTGAAACAGCAAGTAGCACGCGAGCCTAGGTCTTTCCCAACACT 13861 Query 41318 A 41318 | Sbjct 13860 A 13860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397433882318830