Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2389 159 3e-34 seq2841 138 1e-27 seq2614 107 2e-18 seq2600 105 6e-18 seq1352 98.7 8e-16 seq3863 96.9 3e-15 seq2553 87.8 2e-12 >seq2389 Length=30206 Score = 159 bits (176), Expect = 3e-34 Identities = 403/605 (67%), Gaps = 11/605 (2%) Strand=Plus/Plus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 || || | ||| || | ||| || ||||| | || || |||| ||| | ||| | | Sbjct 12740 ACACGTTGCATGAAGAGATCGGGTACCCAAAGGGCATAAAACAAATCACGGGCTCTGATT 12799 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767 || || |||| | | ||| | |||| ||||||| || || || |||||||| || Sbjct 12800 TCATCCTTACCAAAGTTCTTTCTTAAATCTAAAAAGGTAAAGATATCAGCATGCCATGGC 12859 Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACC 131824 || | ||||| || | || ||| ||||| |||||||||| |||| ||| | Sbjct 12860 TCGAGATACATGGCAAAGGCTCCTGGACGCTTGTTGCCGCCTTGATCGACATAACGTGCT 12919 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 |||| ||| |||| ||||||||||| ||||||||| | | ||||| || | | Sbjct 12920 GTGTTATTGAATACACGCAACATGGGAAGCAAACCGTTCGAATAACCATTTGTACCGGCA 12979 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTT 131943 || ||| |||||||| | || || |||| |||||| || ||||| || || || ||| Sbjct 12980 ATATAGGATCCATTGGCACGAATATTATGAATGTTGAGACCGATACCACCTGCAGT-TTT 13038 Query 131944 AGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAAT 132003 || ||| | || || | ||| || | |||||| ||||| | || | || Sbjct 13039 CGAAATTTGGGCACAGATTTTTAATGTTTCATAGATGCCTTCAATTGAATCTTCCTTCAT 13098 Query 132004 GTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGG 132063 | || || ||||||||||||| ||| | || ||| ||||| ||||| || || Sbjct 13099 GGTGAGCAAGAAGCAAGAGGACATCTGAGGACGAGGTGTACCGGCATTGAACAAAGTAGG 13158 Query 132064 GCTGGCGTGTGTAAAAAGTTTTTTGGCCATGCACCGATACGATTGTATAGCGGACTCGAT 132123 ||||| || ||||| | ||| | || ||| | || | | || || | || || Sbjct 13159 ACTGGCATGAGTAAAGAATTTCTCGGACATCAAGTTGTAAGTCTCGATTGCAGCGTCAAT 13218 Query 132124 ATCGCCCAGATGTATGGTCAAT-GCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCG 132182 ||| | || || |||| ||||| |||||| | |||||| |||||||| | Sbjct 13219 ATCTTCACCGTGGAT-ACCAATGGCGACACGCATGATAAGATGTTGAGGACGCTCGGCGG 13277 Query 132183 TTTTGCCGTCGATTTTGATCAAATA--ACCGTTTTCCAAAGTTTTGAAACCAAAATATTT 132240 | |||||||| || |||| | ||| | || ||| | ||| ||||| |||||| | || Sbjct 13278 TCTTGCCGTCAATCTTGAGTAGATAGGATCG--TTCAAGAGTCTTGAATCCAAAAAAGTT 13335 Query 132241 GTATT 132245 ||||| Sbjct 13336 GTATT 13340 >seq2841 Length=27215 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || ||||||||||| | ||| || |||||||| |||||||| || || | | || Sbjct 25441 AAACGTAATACCAAATGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGTACGA 25500 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| || |||||||| || |||| || | |||||||| || || | ||| ||| Sbjct 25501 CCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACCTTCT 25560 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| || ||| |||||| | | || | || || | || ||||||||||| || Sbjct 25561 TTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAATGTG 25620 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||||| || ||||| || ||||||||||||||| Sbjct 25621 ATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 25659 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || |||||||| || | ||| || |||||||| |||||||| || || | | || Sbjct 25675 AAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGTACGA 25734 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| || |||||||| || |||| || | |||||||| || || | ||| ||| Sbjct 25735 CCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACCTTCT 25794 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| || ||| |||||| | | || | || || | || ||||||||||| || Sbjct 25795 TTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAATGTG 25854 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||||| || ||||| || ||||||||||||||| Sbjct 25855 ATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 25893 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || |||||||| || | ||| || |||||||| |||||||| || || | | || Sbjct 25909 AAACGTAATACCAATTGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGTACGA 25968 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| || |||||||| || |||| || | |||||||| || || | ||| ||| Sbjct 25969 CCCTCTTCAAGTTGTTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACCTTCT 26028 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| || ||| |||||| | | || | || || | || ||||||||||| || Sbjct 26029 TTATCTTGAATTTTGCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAATGTG 26088 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||||| || ||||| || ||||||||||||||| Sbjct 26089 ATTGTCTTGCCTGTAAGAGTCTTGACAAAGATTTGCATA 26127 >seq2614 Length=127402 Score = 107 bits (118), Expect = 2e-18 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || |||||||| |||||||| | | | || | |||||| Sbjct 58937 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTACGACCATCTTCG 58878 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| || |||||||||| ||||| || || || | ||| || || || | Sbjct 58877 AGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGG 58818 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | |||| | | || | | ||| ||||||| ||| |||| || Sbjct 58817 ATCTTTTGCTTTACATTTTCGATGCTATCAGAAGATTCGACTTCTAAAGTGATAGTCTTT 58758 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAATTTATTAAA 27268 || || || || || ||||||||||||| || | | ||||||||||| Sbjct 58757 CCTGTAAGGGTCTTTACAAAGATTTGCA----TGTTTATAATTTATTAAA 58712 >seq2600 Length=207564 Score = 105 bits (116), Expect = 6e-18 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 27008 TTCATAATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAAT 27067 ||| | | |||| || || | || || ||||||||||| | || || || ||||| || Sbjct 124535 TTCTTCACTATTTCCACCTCTTAAACGTAATACCAAATGGAGTGTTGATTCCTTTTGTAT 124476 Query 27068 ATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTG 27127 ||| || ||||| | | || | ||||| || ||||| || || | || || | || Sbjct 124475 ATTATAATCGCTTAATGTACGACCATCTTCTAGTTGTTTGCCAGCAAAGATAAGTCTTTG 124416 Query 27128 TTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTC 27187 |||||| || || | ||| ||||| || || || |||||| | || | || || Sbjct 124415 TTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTCACATTATCAATGGTATC 124356 Query 27188 TGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | ||||||||||| || || | |||||| || ||||| || ||||| |||||||| Sbjct 124355 GGAAGATTCAACTTCTAATGTGATTGTTTTGCCTGTAAGAGTCTTGACAAATATTTGCAT 124296 Query 27248 A 27248 | Sbjct 124295 A 124295 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || ||||||||||| ||||| || | | || | ||||| Sbjct 124276 ACTAAATGAAGAGTTGATTCCTTTTGAATATTATAGTCACTGAGAGTACGACCATCTTCT 124217 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||| || || | |||||||| |||||||| || || | ||| || ||||| Sbjct 124216 AATTGTTTGCCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGA 124157 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | | || | | | || | | ||||||||||| ||| |||| ||| Sbjct 124156 ATCTTTTGCTTTACGTTATCGATACTATCAGAAGATTCAACTTCTAAAGTGATAGTTTTA 124097 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || ||||| ||||||||| Sbjct 124096 CCAGTAAGGGTCTTGACAAAAATTTGCATA 124067 >seq1352 Length=65141 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| |||||||| | | |||| | ||||| Sbjct 16226 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCA 16285 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || | || | ||| |||||||| || || | ||| || || || | Sbjct 16286 AGCTGCTTACCAGCAAAGATCAAACGTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGG 16345 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || | || | | |||| | | || | || ||| || || | ||| || | ||| Sbjct 16346 ATTTTTTGCTTGACGTTTTCGATGCTATCAGAGGATTCGACCTCCAAAGTGATGGTCTTG 16405 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| |||||||||||||| Sbjct 16406 CCAGTAAGTGTTTTAACAAAGATTTGCAT 16434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| || ||||| | | |||| | ||||| Sbjct 15314 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCTTCA 15373 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || | || | |||||||||||| || || | ||||| || || Sbjct 15374 AGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGA 15433 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | || | | | || | | |||||||| | ||| || | ||| Sbjct 15434 ATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTA 15493 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||| || ||||| ||||||||| Sbjct 15494 CCAGTCAAAGTCTTGACAAAAATTTGCATA 15523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| || ||||| | | |||| | ||||| Sbjct 15770 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAAAGGGTGCGGCCATCTTCA 15829 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || | || | |||||||||||| || || | ||||| || || Sbjct 15830 AGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATGCCCTCCTTGTCTTGA 15889 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | || | | | || | | |||||||| | ||| || | ||| Sbjct 15890 ATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACTTCCAAAGTGATGGTTTTA 15949 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||| || ||||| ||||||||| Sbjct 15950 CCAGTCAAAGTCTTGACAAAAATTTGCATA 15979 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || ||||||||||||||||| |||| | || ||||||| Sbjct 15086 ACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTCAAAGTACGACCGTCTTCC 15145 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| || | || | |||||||||||| || || | ||||| ||||| Sbjct 15146 AATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTCCCTCCTTATCTTGA 15205 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | || | | || | | || ||||| | ||| || | || Sbjct 15206 ATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTAATGGTCTTA 15265 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| || || || ||||||||| Sbjct 15266 CCAGTGAGAGTCTTGACGAAAATTTGCATA 15295 >seq3863 Length=144211 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| |||||||| |||| | |||| | ||||| Sbjct 119968 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCACTCAAGGTGCGACCATCTTCC 120027 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 | |||||||||||| |||||||||| |||||||| || || | ||| || || || Sbjct 120028 AATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTC 120083 >seq2553 Length=14598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || |||||||| ||||||||||||| | || ||||||| Sbjct 8203 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTACGACCGTCTTCT 8144 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 | |||||||||||| |||||||||| ||||| || || || | ||| || || || Sbjct 8143 AATTGTTTACCGGCGAAAATGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTC 8088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424910753197392