Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2389 205 1e-47 seq2614 95.1 2e-14 seq2429 87.8 2e-12 >seq2389 Length=30206 Score = 205 bits (226), Expect = 1e-47 Identities = 558/845 (66%), Gaps = 17/845 (2%) Strand=Plus/Plus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || || || ||||| || |||||||| ||||| | ||| || || | |||||| Sbjct 12416 GCAATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGACTTGTATATTCGACAATTTCC 12475 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 ||||| | ||| || ||||| || ||||| || | || || ||||| | || || Sbjct 12476 GTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGCTGATTGCTCTTTCTATTACAA 12535 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||||||||||| | || | || || || || |||| || | ||||| | | Sbjct 12536 GCATCCTTGTAGAGCATAAATGGATTACCGGTTTCAGTTTGTGCTTCCAAGATAGCATAC 12595 Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCG-TCCCTCCGCCT-CGTACTTTGTG 111472 || ||| | | | || || | || | | | | | ||| ||| | | || || Sbjct 12596 CATAACTTTTGTGCCT--TA-ATTGTCTCTCTCGCTCTTCCTTCGCGTTCATAGCTTTCA 12652 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 || || || ||||||| |||||| | || | ||| ||||| | | ||||| Sbjct 12653 TAAAGAGCCACAAACTCATCACCCCAAACATCTTGCAAACCAGGTGCTTCATTAGGACAA 12712 Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 || |||||||| | ||||| |||| || || | |||||| || || || | ||| ||| Sbjct 12713 AAGAGAGACCAATCTCCACCGTCCTTGACACGTTGCATGAAGAGATCGGGTACCCAAAGG 12772 Query 111593 GATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | |||| | ||| | | | || || || | ||| ||| || ||| || | Sbjct 12773 GCATAAAACAAATCACGGGCTCTGATT-TCATCCTTACCAAAGTTCTTTCTTAAATCTAA 12831 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 111711 || | |||||| || ||||||||||| ||||| | || | | ||| | |||| Sbjct 12832 AAAGGTAAAGATATCAGCATGCCATGGCTCGAGATACATGGCAAAGGCTCC---TGGACG 12888 Query 111712 C------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | || |||||| ||||| || |||||| || ||||| || | ||| |||| Sbjct 12889 CTTGTTGCCGCCTTGATCGACATAACGTGCTGTGTTATTGAATACACGCAACATGGGAAG 12948 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 | ||| | || | ||||||||| || |||| ||| |||||| | | || ||| Sbjct 12949 CAAACCGTTCGAATAACCATTTGTACCGGCAATATAGGATCCATTGGCACGAATATTATG 13008 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 |||| | || ||||| || || || || ||||| ||||| | | ||| | Sbjct 13009 AATGTTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTTAATGTTTC 13068 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 |||||| || | ||||| || ||||| ||| || | ||||||| ||||||||| || Sbjct 13069 ATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGACATCTGAGG 13128 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 112005 | |||||||| |||||||| | || || | || ||| | || | | |||||| Sbjct 13129 ACGAGGTGTACCGGCATTGAACAAAGTAGGACTGGCATGAGTAAAGAATTTCTCGGACAT 13188 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 | || ||| ||||| | ||| ||||| ||||| |||||||| || || ||||| || Sbjct 13189 CAAGTTGTAAGTCTCGATTGCAGCGTCAATATCTTCACCGTGGATACCAATGGCGACACG 13248 Query 112066 CATGA 112070 ||||| Sbjct 13249 CATGA 13253 Score = 114 bits (126), Expect = 2e-20 Identities = 264/392 (67%), Gaps = 7/392 (2%) Strand=Plus/Plus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 ||||| || |||||||| ||||| |||||| ||||| | |||||| || || ||||| Sbjct 11842 GTGTAAGGCTCAAAGCACTCATTGAAACCCAACATTTGAGAGGTGGAAGCGGTAGGCATA 11901 Query 110780 GGTGCCATCAAAAGACTG--TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837 || || | | |||| || || || | || | || || |||||| || | Sbjct 11902 GGGGCTA--ATAAGAGTGAATTGCGGACGCCATGCTTGGCTATCTTTTCCTTTAGTGAAG 11959 Query 110838 CCCAGTCGTAGTT-GAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG 110896 ||||||| | ||| | || |||| |||| ||||||| | || | | || | | Sbjct 11960 CCCAGTCCCAAAGAGAGGTGGGAGTCACATTCC-ACATGTCGTATTGTAATATGCCCTTG 12018 Query 110897 GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTC 110956 || | ||| ||||||| | |||||||| | || | |||||||||||| || Sbjct 12019 GATACAGGACTACCCTCATAAGTTTCATAAGGTCCGTACTTTTCAGCCAATTCGCATGAG 12078 Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016 || |||| || |||||||| |||||||||||||| || ||| | | ||||||||| Sbjct 12079 GCTTCCAAGGCAGCGTGATAGATGGTTTCAAAGATTTGAATATTTAATTGTTTGGCTTCA 12138 Query 111017 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 || ||||| | ||| || | || ||| || || | ||||| ||||| ||| Sbjct 12139 GGAGAGTCAAAGGGGTAACGTAAGGCCATGAATGTGTCGGCTAATCCTTGGACACCTAAA 12198 Query 111077 CCAATAGGTCTGTGTCGCATATTAGA-CTTTC 111107 || ||||| | |||| | | || || ||||| Sbjct 12199 CCGATAGGACGATGTCTCTTGTTTGATCTTTC 12230 >seq2614 Length=127402 Score = 95.1 bits (104), Expect = 2e-14 Identities = 198/290 (68%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 182517 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 182576 ||||||||||||||||||||||||| ||| ||| ||||| ||||| | |||||||| Sbjct 43743 AGACCCTTGATGTGAGAACCATCATGATCCTGATCAGTCATGATCATCAAGCGACCATAT 43802 Query 182577 CGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGTTGAAGACCAAGGATCTTCTTGAG 182635 | ||| || |||| |||| || | ||| || ||||| ||||||||||| ||||| Sbjct 43803 CTAAGCTCGTCAACA-CTTGTATATTTTTTACCATGTTGGAGACCAAGGATGGCCTTGAT 43861 Query 182636 ATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACA 182695 | || | || | || ||| | || ||||| || || ||||| Sbjct 43862 ACTCTTAATTTCTTCATTCTTCATAATTTCAGCATTAGAAGCATCACGGACATTGAGCAG 43921 Query 182696 TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACC-CGCAA 182754 |||||| |||| || || ||||| | | |||||| ||| ||||| | ||| | ||| Sbjct 43922 TTTACCACGAATGGGAAAGACACCCCAATAATCACGTTTAACAACAGACAAACCACTCAA 43981 Query 182755 CCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTT 182804 | || | ||| || ||||| || || || | ||| | ||||| ||| Sbjct 43982 -AACAAGCGCTTTGGCTGAATCTCCTTCAGTAATAATCAAGGTACATTTT 44030 >seq2429 Length=29321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 111925 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984 ||| ||||| || | ||| ||||| |||||||||||||| || | ||| ||||| || || Sbjct 15192 GAAACAACTAGAGAGCTGAGGTCTGGGTGTACCAGCATTAAACAAGGTAGGTGTAGCATG 15133 Query 111985 AATGAACATACCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCC 112042 | | || || |||| |||||| || || |||| ||| || || | ||| | Sbjct 15132 AGT-AAAGTA-TTTGGAAGACATCAAATCATAGGTCTTGAAGGCACCTTCCAAGTCACCA 15075 Query 112043 CCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||| |||||||| || || ||||||| ||| ||||| || Sbjct 15074 CCGTGAATGCCGATAGCAACGCGCATGATCATATACTGAGG 15034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627996155073600