Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4556 89.7 6e-13 seq3946 87.8 2e-12 >seq4556 Length=51470 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| ||||| || ||||| |||| | |||||| ||| || ||| Sbjct 9874 GGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACC 9933 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| | ||| || ||||| ||||| || || | ||||||||||| |||||||| Sbjct 9934 GGGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGAT 9993 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || || ||| || || || | ||||| ||||||||||| Sbjct 9994 GCCTTCGACAGCGGCAAAGGCGACCAGACGTTCAGCAAAGGA 10035 >seq3946 Length=52427 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATT-CGAGAAGCACAGACCTGGCATGAGACC 130086 || ||||| |||||||| | || | |||||| | | ||| || ||| ||||| | ||| Sbjct 26335 TGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGT-CAAACCGGGCATCAAACC 26393 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||| | ||| ||||| | | ||||||||| || ||||| || || || || Sbjct 26394 ACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTTCTACTGC 26453 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || || |||| ||||||||||||||||| Sbjct 26454 AGCAAAAGCAACAAGACGCTCAGCAAAGGA 26483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618399902810960