Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2389 206 3e-48 seq2614 86.0 7e-12 seq2429 84.2 3e-11 >seq2389 Length=30206 Score = 206 bits (228), Expect = 3e-48 Identities = 588/901 (65%), Gaps = 12/901 (1%) Strand=Plus/Minus Query 104235 TCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACG 104294 ||||||| || ||||| ||||| || || ||||| ||||| ||| | ||||| ||| Sbjct 13253 TCATGCGTGTCGCCATTGGTATCCACGGTGAAGATATTGACGCTGCAATCGAGACTTACA 13194 Query 104295 ACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACAC 104354 || ||||||| | | || | ||| || | || || | |||||||| ||||||| Sbjct 13193 ACTTGATGTCCGAGAAATTCTTTACTCATGCCAGTCCTACTTTGTTCAATGCCGGTACAC 13134 Query 104355 CAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTA 104414 | | || || |||||| ||||||| | || ||| ||||| || ||||| | || | Sbjct 13133 CTCGTCCTCAGATGTCCTCTTGCTTCTTGCTCACCATGAAGGAAGATTCAATTGAAGGCA 13074 Query 104415 TCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGC 104474 |||||| ||| | | ||||| ||||| || || || || ||||| || | Sbjct 13073 TCTATGAAACATTAAAAATCTGTGCCCAAATTTCGAAAACTGCAGGTGGTATCGGTCTCA 13014 Query 104475 ACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATG 104534 |||| ||| || | | |||||| ||| |||| || ||||||||| | || | | Sbjct 13013 ACATTCATAATATTCGTGCCAATGGATCCTATATTGCCGGTACAAATGGTTATTCGAACG 12954 Query 104535 GTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG-- 104592 || | |||| ||| | || ||||| || |||||| || ||||| |||||| || Sbjct 12953 GTTTGCTTCCCATGTTGCGTGTATTCAATAACACAGCACGTTATGTCGATCAAGGCGGCA 12894 Query 104593 ----GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGG 104648 ||||| | ||| | | || | ||||| ||||||||||| || |||||| | Sbjct 12893 ACAAGCGTCCA---GGAGCCTTTGCCATGTATCTCGAGCCATGGCATGCTGATATCTTTA 12837 Query 104649 AGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCT 104708 || | || || | ||| ||| | || || | ||| ||| | || | Sbjct 12836 CCTTTTTAGATTTAAGAAAGAACTTTGGTAAGGATGAAATCAGAGCCCGTGATTTGTTTT 12777 Query 104709 CCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTC 104768 || || ||| | || |||||||||||| | | || |||| |||| ||||||||| Sbjct 12776 ATGCCCTTTGGGTACCCGATCTCTTCATGCAACGTGTCAAGGACGGTGGAGATTGGTCTC 12717 Query 104769 TCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCC 104828 |||||||||| | | ||||||||| | |||| |||||| ||||||| || | Sbjct 12716 TCTTTTGTCCTAATGAAGCACCTGGTTTGCAAGATGTTTGGGGTGATGAGTTTGTGGCTC 12657 Query 104829 TTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGT 104888 |||| || || || ||||| | |||| | ||| | || | | | Sbjct 12656 TTTATGAAAGCTATGAACGCGAAGGAAGAGCGAGAGAGACAATTAAGGCACAAAAGTTAT 12597 Query 104889 GGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACG 104948 || | ||||| | | | ||||| || || |||| |||| ||||| ||||| || | Sbjct 12596 GGTATGCTATCTTGGAAGCACAAACTGAAACCGGTAATCCATTTATGCTCTACAAGGATG 12537 Query 104949 CCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTA 105008 | ||||| |||||| ||||| | || |||||| || || || || || |||| Sbjct 12536 CTTGTAATAGAAAGAGCAATCAGCAAAACTTGGGTACCATTAAATGTAGTAACCTTTGTA 12477 Query 105009 CAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCG 105068 | ||||| | |||| |||| ||||| ||||| |||||| | || || || | Sbjct 12476 CGGAAATTGTCGAATATACAAGTCCCGATGAAGTTGCTGTTTGTAACTTGGCTTCTATTG 12417 Query 105069 CTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAG 105128 || | |||| | ||| ||| | ||| || | | |||| | | ||||||||||| Sbjct 12416 CTTTACCCACTTTTGT-AATCAACAGAGAA--TCTTACGATTTCAAGAGACTCCACGAAG 12360 Query 105129 T 105129 | Sbjct 12359 T 12359 >seq2614 Length=127402 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 169169 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 169228 |||||||||||||| ||||| || | ||| ||| ||||||||||| | |||||||| Sbjct 43743 AGACCCTTGATGTGAGAACCATCATGATCCTGATCAGTCATGATCATCAAGCGACCATAT 43802 Query 169229 CGAAGCTCGGAAACATCTTG-ATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGA 169286 | ||||||| |||| |||| ||| | ||||| ||||| ||||| | ||| ||||| Sbjct 43803 CTAAGCTCGTCAACA-CTTGTATATTTTTTACCATGTTGGAGACCAAGGATGGCCTTGA 43860 >seq2429 Length=29321 Score = 84.2 bits (92), Expect = 3e-11 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 104197 ||||| || ||||| || ||||| |||||||| | || || |||||| | | Sbjct 14950 AGAGATTATGACTTCAATTTCTTTGGATTCAAAACCTTAGAACGCAGTTATCTTTTAAAG 15009 Query 104198 CTCGATGGT-GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | ||||| | ||| || | || ||||| ||| |||||||||| || ||||| || Sbjct 15010 ATAAATGGTCGAATTGTTG-AGCGTCCTCAGTATATGATCATGCGCGTTGCTATCGGCAT 15068 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTC--CCAAGGTATG 104314 ||| || | ||| | || || ||| |||| || || |||||| |||| || Sbjct 15069 TCACGGTGGTGACTTGGAAGGTGCCTTCAAGACCTATGATTTGATGTCTTCCAAA-TACT 15127 Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGT 104374 || | ||| || ||||| ||| | || |||||||||||||| ||||| || | || ||| Sbjct 15128 TT-ACTCATGCTACACCTACCTTGTTTAATGCTGGTACACCCAGACCTCAGCTCTCTAGT 15186 Query 104375 TGCTTC 104380 || ||| Sbjct 15187 TGTTTC 15192 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 ||||| ||||| | || || | ||| | || || | ||| || ||| || || ||| Sbjct 15977 GCTGTATGTAATTTGGCTTCTCTTGCTTTGCCTAAATTTGTTGACAAAGACACTAAAACA 16036 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 ||||||| | ||||| ||||||||||| || ||||||| ||| | |||| |||| Sbjct 16037 TTTGATTTCGCTAAACTTCACGAAGTTACTAAGGTTGTCACCCGTAACTTGAACAAAGTT 16096 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||||| |||| ||||| || || ||||| || ||| ||| | |||||||| Sbjct 16097 ATTGATGTGAATTACTACCCAGTAGAAGAAGCTCGCAACAGTAACATGCGTCACCGTCC 16155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583227510389840