Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2429 91.5 2e-13 >seq2429 Length=29321 Score = 91.5 bits (100), Expect = 2e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 78195 CAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAG 78254 ||||||||||||||||||||| | || |||||||| | || | |||||| | || Sbjct 16924 CAAATAGTACATGCCCGTCTTTAATCCTTTCTTCCAAGCATAGAAATGCATAGAAGTCAA 16865 Query 78255 CTTGGCCAGACTCGGGTTCTCCA-TGAAGATGTTGAGCGACTGGGACTGGTCGATGTACG 78313 ||| | | ||| ||||| || |||| | ||| | ||| || ||||| || || || | Sbjct 16864 CTTTCCGAAACT-TGGTTCGGCAGTGAATAAGTTCATCGATTGAGACTGATCAATATAGG 16806 Query 78314 CACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 |||| ||||| |||||||| || || | | |||||| ||| ||||| Sbjct 16805 CACCACGGTCAGCCGCCATATCAATAATGGTTCTTTGCGAAATTTCCCA 16757 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 20618 CTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCG 20677 |||||||| | |||| ||| || |||||||| | || | | ||| || || |||||| Sbjct 16733 CTCAAGGAATTGTACAAGACTGTGTGGGAAATTTCGCAAAGAACCATTATTGATATGGCG 16792 Query 20678 GCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCA-TGGAGAATCC 20736 || || || || ||||| || || ||||| || ||| | || | |||| || ||| || Sbjct 16793 GCTGACCGTGGTGCCTATATTGATCAGTCTCAATCGATGAACTTATTCACTGCCGAA-CC 16851 Query 20737 GAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGG 20796 || | | ||| ||| || |||||| | || | ||| | || || | |||||||| Sbjct 16852 AAGTTTCGGAAAGTTGACTTCTATGCATTTCTATGCTTGGAAGAAAGGATTAAAGACGGG 16911 Query 20797 CATGTACTATCTGCGG 20812 |||||||||| || || Sbjct 16912 CATGTACTATTTGAGG 16927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548493492947040