Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2389 122 1e-22 seq3946 104 3e-17 seq4556 95.1 1e-14 >seq2389 Length=30206 Score = 122 bits (134), Expect = 1e-22 Identities = 182/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGT 53238 ||||| ||||| ||||||| |||||| | |||||||||||||| || | |||| || Sbjct 13266 CCTCAACATCTTATCATGCGTGTCGCCATTGGTATCCACGGTGAAGATATTGACGC-TGC 13208 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 ||||| ||| |||| ||| | | || | |||||| || |||| || || |||| Sbjct 13207 AATCGAGACTTACAACTTGATGTCCGAGAAATTCTTTACTCATGCCAGTCCTACTTTGTT 13148 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 ||| || ||||| || ||||||||||| |||||| || | | |||||||| || Sbjct 13147 CAATGCCGGTACACCTCGTCCTCAGATGTCCTCTTGCTTCTTGCTCACCATGAAGGAAGA 13088 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 || || || |||||||| || || | || |||||||| || || || | || Sbjct 13087 TTCAATTGAAGGCATCTATGAAACATTAAAAATCTGTGCCCAAATTTCGAAAACTGCAGG 13028 Query 53419 TGGTATCGGTATCCAC 53434 |||||||||| || || Sbjct 13027 TGGTATCGGTCTCAAC 13012 >seq3946 Length=52427 Score = 104 bits (114), Expect = 3e-17 Identities = 227/338 (67%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 124509 TGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCAC 124568 || || ||||| ||| | | |||||||||| || | ||||| | ||| |||||| Sbjct 15204 TGTGTTTCACCTGTGGCTAGGACGAAATCTTGAGGCTTTTCTTGCTGAAGCATGAGCCAC 15263 Query 124569 ATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC 124628 || | | || ||||| || || ||||| || || |||||||| | ||| || || Sbjct 15264 ATACCCTCTACATAGTCACGAGCATGTCCCCAATCACGTTTGGCATCAATGTTACCCAGA 15323 Query 124629 TC--GATTGGCTTGGCCGTCTTGTTCCAC-TCCGCCAAACCCAGTGTAATCTTGCGCGTC 124685 | || |||| | | | | | || |||| | | | ||||| || || || Sbjct 15324 TAAAGACAATCTTGACGGCCCAAGTGAATATCGGCCACAGCACGGGTAATTTTACGGGTT 15383 Query 124686 ACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAAC 124745 ||||| ||| || || || ||||||||||| || || ||| | || ||| || Sbjct 15384 ACAAAGGTACGACCACGACGAGGTGATTCGTGGTTGAAAAGGATACCATTGCAAGCATAC 15443 Query 124746 ATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCA 124805 || |||| ||||| ||||||||| || ||||| || ||| |||| |||| || ||| Sbjct 15444 ATATCGTAGGACTCACGGTAGTTTACAGTGATCCAGTAGCCATAGAGTTTGGCAACACCA 15503 Query 124806 TAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG 124843 || || ||| || ||||| || ||| |||| ||||| Sbjct 15504 TAAGGAGATCGAGGATAGAAGGGCGTGGTTTCCTTTTG 15541 >seq4556 Length=51470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||| | | ||||||||||| ||| | | || ||||| | ||||| ||| Sbjct 9893 CCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGGCATCAAACCACGTTTC 9952 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || ||||||||||||| ||| || ||| |||||||||||||||||| |||||| Sbjct 9953 TTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCCTTCGACAGCGGCAAAG 10012 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGA--GCCCATTCAG 74946 ||||| || |||| || || | | | | ||| | ||||| | ||| ||||| || | Sbjct 10013 GCGACCAGACGTTCAGCAAAGGATTCGTTGGATGAGATCCA--TTTGAAGGCCCAATCTG 10070 Query 74947 CTTTTCGTTT 74956 | || || || Sbjct 10071 CCTTACGCTT 10080 Score = 93.3 bits (102), Expect = 5e-14 Identities = 203/301 (67%), Gaps = 11/301 (4%) Strand=Plus/Minus Query 159001 TGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTG 159060 || || |||||||||||||| |||| || || || | || || ||||| || || ||| Sbjct 6007 TGCTGAAGCATGAGCCACATACCCTCCACATAGTCACGAGCATGTCCCCAATCACGTTTG 5948 Query 159061 GCATCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCAC-------TCAGCCAG 159113 || || ||||| || || | | ||| || | ||| ||| ||||| | Sbjct 5947 GCGTCAATGTTACCCAGATAAA-GACATT-CTTGACGAC--CCAAGTGAATATCAGCTAC 5892 Query 159114 ACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAA 159173 | | | |||||||| || || ||||| || || || || ||||||||||| Sbjct 5891 AGCACGAGTGATCTTTCGAGTGACAAAGGTACGACCACGACGGGGTGATTCATGGTTAAA 5832 Query 159174 CAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTA 159233 |||||| ||| |||| || ||| || || || || ||||| || || |||||||| Sbjct 5831 CAGAATACCGTTACAGGCATACATGTCGTAAGATTCTCGGTAGTTGACCGTAATCCAGTA 5772 Query 159234 TCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 ||| |||| |||| || || || ||| ||||| || || ||||| ||| ||||| Sbjct 5771 ACCATAGAGTTTGGCCACACCATAAGGAGAACGAGGGTAGAAGGGTGTAGTCTCCTTTTG 5712 Query 159294 A 159294 | Sbjct 5711 A 5711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547184767646800