Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1352 140 2e-28 seq2614 134 9e-27 seq2553 91.5 9e-14 seq3863 82.4 5e-11 >seq1352 Length=65141 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| |||||||| ||||||||||||||||| |||||| Sbjct 15296 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAA 15355 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || ||||| ||||| || ||||||||||| || || || Sbjct 15356 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 15415 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| |||||||| || | ||| | || ||| ||| Sbjct 15416 ATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACT 15475 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || |||||||| || || || || |||||||| ||||| Sbjct 15476 TCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15522 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| |||||||| ||||||||||||||||| |||||| Sbjct 15752 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTATAGTCTGAA 15811 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || ||||| ||||| || ||||||||||| || || || Sbjct 15812 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 15871 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| |||||||| || | ||| | || ||| ||| Sbjct 15872 ATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATACTATCAGAAGACTCAACT 15931 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || |||||||| || || || || |||||||| ||||| Sbjct 15932 TCCAAAGTGATGGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 15978 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| |||||||| |||||||||||||| || |||||| Sbjct 16208 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCTGAA 16267 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || ||||| ||||| || ||||| ||||| || || || Sbjct 16268 AGGGTGCGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAAACGTTGTTGATCAGGAGGG 16327 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | || ||||||||| ||| ||||| || Sbjct 16328 ATACCTTCCTTGTCTTGGATTTTTTGCTT 16356 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 || || | |||||| | ||||| || || ||| ||||||||||| || || | || Sbjct 15068 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTC 15127 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||| || || ||||||| | ||||||||| ||||| || ||||||||||| || || | Sbjct 15128 AAA--GTACGACCGTCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAG 15185 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCA 34657 | | ||||||||| ||| |||||||| || | ||| | || ||| | Sbjct 15186 GAATTCCCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGA 15245 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || ||||| || | || || || ||||| ||||| Sbjct 15246 CTTCCAAAGTAATGGTCTTACCAGTGAGAGTCTTGACGAAAATTTGCAT 15294 >seq2614 Length=127402 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||||| || |||||| || ||||||||||| || |||||| Sbjct 59411 CCGCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAA 59352 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||||||| ||||| || ||||| |||||||| || || Sbjct 59351 AGGGTACGGCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGAGGA 59292 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||||||| |||||||| |||| | ||| | || ||| ||| Sbjct 59291 ATCCCTTCCTTGTCTTGAATCTTTTGCTTTACATTTTCAATACTATCAGAAGACTCAACT 59232 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| || | ||||| || ||||||||||| Sbjct 59231 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCAT 59185 Score = 129 bits (142), Expect = 4e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| ||||||||| |||||||||||||| || |||||| Sbjct 58955 CCACCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAA 58896 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||||||||| ||||| || | ||| |||||||| || || Sbjct 58895 AGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAGGA 58836 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA 34630 | || ||||||||| ||||||||| |||| Sbjct 58835 ATACCTTCCTTGTCTTGGATCTTTTGCTTTA 58805 Score = 114 bits (126), Expect = 8e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 ||||| | |||||| | ||||| ||||||||| |||||||||||||| |||| || Sbjct 59183 CCGCCACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCACTC 59124 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||| || || | ||||| || || ||||| ||||| || ||||| || || || || | Sbjct 59123 AAA--GTACGACCATCTTCGAGCTGCTTACCAGCAAAGATCAAACGTTGCTGATCAGGAG 59066 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | || ||||||||| |||||||| || ||| | ||| | || || Sbjct 59065 GAATACCTTCCTTGTCTTGAATCTTTTG-CTTGACGTTCTCAATACTATCAGAAGATTCG 59007 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || |||||||| || | ||||| || ||||||||||| Sbjct 59006 ACTTCCAAGGTAATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCAT 58957 >seq2553 Length=14598 Score = 91.5 bits (100), Expect = 9e-14 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 || || | |||||| | ||||| || || ||| |||||||||||||| || || | Sbjct 8221 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCGCTC 8162 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| || ||||||| | |||||||||||| || || | ||| |||||||| || | Sbjct 8161 AAAGTA--CGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGGTCAGGAG 8104 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | | || ||||||||| |||||||| || Sbjct 8103 GAATACCTTCCTTGTCTTGAATCTTTTGCTT 8073 >seq3863 Length=144211 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/151 (73%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 || || | |||||| | ||||| || ||||| |||||||||||||| || | || Sbjct 119950 CCACCACGAAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCACTC 120009 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || ||| || | ||||| | |||||||||||| || || | ||| ||||| || || | Sbjct 120010 AAGGTG--CGACCATCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAG 120067 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | | || ||||||||| |||||||| || Sbjct 120068 GAATACCTTCCTTGTCTTGAATCTTTTGCTT 120098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314712085887878