Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2614 89.7 4e-13 seq1352 87.8 1e-12 seq3863 86.0 4e-12 >seq2614 Length=127402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || ||||| |||||||| ||| ||||| | || |||||| | Sbjct 58957 ATGCAGATTTTCGTCAAAACCCTTACTGGTAAAACCATTACCTTGGAAGTCGAATCTTCT 59016 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | | ||||| ||||| || ||||| |||||| |||| || ||| Sbjct 59017 GATAGTATTGAGAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 59076 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || ||||| || || || | || || | || | ||| ||||||||| Sbjct 59077 CAACGTTTGATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGTACTTTGAGTGATTACAAC 59136 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || |||| | || |||||| | ||| | |||||||| Sbjct 59137 ATTCAAAAGGAATCCACTCTCCACTTGGTTCTCCGTCTTCGTGGCGG 59183 >seq1352 Length=65141 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 |||||||||||| ||||| ||||| |||||||| || || || | || |||||| Sbjct 16438 TAAAATGCAAATCTTTGTTAAAACACTTACTGGCAAGACCATCACTTTGGAGGTCGAATC 16379 Query 27846 CACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | | || | || ||||| |||||||| ||||| |||||| | || || Sbjct 16378 CTCTGATAGCATCGAAAACGTCAAGCAAAAAATCCAAGACAAGGAAGGTATCCCTCCTGA 16319 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || ||||| || || ||||| || || || | || || | |||| | | || || || Sbjct 16318 TCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGCACCCTTTCAGACTA 16259 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| || ||| | || |||||| | ||| | ||||| || Sbjct 16258 CAACATTCAAAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 16208 >seq3863 Length=144211 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 27858 ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTT 27917 ||||| ||||| ||||| || ||||| |||||| |||| || || ||||| | Sbjct 120106 ACAAT--GTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAACGTCT 120049 Query 27918 AATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAA 27977 ||||| ||||| ||||||||||| || | |||| |||| || |||||||| ||||| Sbjct 120048 CATTTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGAGTGACTACAACATTCAAAA 119989 Query 27978 AGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||| | || |||||| | ||| | ||||| || Sbjct 119988 GGAATCTACTCTTCACTTGGTTCTCCGTCTTCGTGGTGG 119950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355842596924682