Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2614 183 7e-41 seq1352 183 7e-41 seq3863 136 9e-27 seq2553 131 4e-25 seq2577 102 2e-16 seq3464 87.8 4e-12 >seq2614 Length=127402 Score = 183 bits (202), Expect = 7e-41 Identities = 178/228 (78%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| |||||||| || ||||| ||||| || || | |||||| Sbjct 58950 ACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAAAGGGT 58891 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || || || || || ||||||||||| ||||||| || Sbjct 58890 ACGACCATCTTCGAGTTGTTTACCAGCAAAAATGAGACGTTGTTGGTCTGGAGGAATACC 58831 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||||||||| || || ||||||||| | ||||| ||| || || | Sbjct 58830 TTCCTTGTCTTGGATCTTTTGCTTTACATTTTCGATGCTATCAGAAGATTCGACTTCTAA 58771 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTAT 211119 |||||| |||||||| || || ||||||||||| | ||||| ||||| Sbjct 58770 AGTGATAGTCTTTCCTGTAAGGGTCTTTACAAAGATTTGCATGTTTAT 58723 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | |||||||||||| |||||||| ||||| || || | |||||| Sbjct 59406 ACGAAGACGAAGGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAAAGGGT 59347 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | || || || || ||||| | ||||||||||||||||||| || Sbjct 59346 ACGGCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCAGGAGGAATCCC 59287 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || |||||||| || || ||||| || | ||||| ||||| || | Sbjct 59286 TTCCTTGTCTTGAATCTTTTGCTTTACATTTTCAATACTATCAGAAGACTCAACTTCTAA 59227 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || || || || || || || | |||||| Sbjct 59226 AGTGATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCAT 59185 Score = 134 bits (148), Expect = 3e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| |||||||| || ||||| ||||| ||||| | ||| | Sbjct 59178 ACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCACTCAAAG- 59120 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| |||||||| || || ||||| | ||||| || |||||||||| | Sbjct 59119 TACGACCATCTTCGAGCTGCTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATAC 59060 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||||||||| || |||||||| || ||||| || || | ||||| ||| || || | Sbjct 59059 CTTCCTTGTCTTGAATCTTTTGCTTGACGTTCTCAATACTATCAGAAGATTCGACTTCCA 59000 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || || || || | |||||| Sbjct 58999 AGGTAATGGTTTTACCAGTAAGGGTTTTGACGAAAATCTGCAT 58957 >seq1352 Length=65141 Score = 183 bits (202), Expect = 7e-41 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| || || ||||| ||||| || || | |||||| Sbjct 16213 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCTGAAAGGGT 16272 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| || || ||||| | |||||||| |||||||| | || Sbjct 16273 GCGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAAACGTTGTTGATCAGGAGGGATACC 16332 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||| ||||| || |||||||||||| | |||||| ||| ||||| | Sbjct 16333 TTCCTTGTCTTGGATTTTTTGCTTGACGTTTTCGATGCTATCAGAGGATTCGACCTCCAA 16392 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 |||||| ||||| || || || || || ||||| | ||||||||| Sbjct 16393 AGTGATGGTCTTGCCAGTAAGTGTTTTAACAAAGATTTGCATTTTA 16438 Score = 125 bits (138), Expect = 2e-23 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| |||||||| || ||||||||||| || || | ||| | Sbjct 15529 ACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAA-AG 15587 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||||| || || || ||||| || || ||||| || |||||||||| | Sbjct 15588 TGCGACCGTCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGC 15647 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| || || |||||||| || || || || ||| | ||||| || || || | Sbjct 15648 CCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCA 15707 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | |||||| || || | ||||| Sbjct 15708 AAGTGATGGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 15750 Score = 125 bits (138), Expect = 2e-23 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| |||||||| || ||||||||||| || || | ||| | Sbjct 15985 ACGAAGACGGAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAA-AG 16043 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||||| || || || ||||| || || ||||| || |||||||||| | Sbjct 16044 TGCGACCGTCTTCCAATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGC 16103 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| || || |||||||| || || || || ||| | ||||| || || || | Sbjct 16104 CCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCA 16163 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | |||||| || || | ||||| Sbjct 16164 AAGTGATGGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 16206 Score = 120 bits (132), Expect = 7e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | |||||| ||||| || ||||| || || || || | ||| | Sbjct 15073 ACGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTCAAAG- 15131 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||||| || || || || ||||| | || ||||| |||||||||| || Sbjct 15132 TACGACCGTCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTC 15191 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| || || |||||||| || || || || ||| | ||||| || || || | Sbjct 15192 CCTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCA 15251 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || ||||||||||| || || | ||||| Sbjct 15252 AAGTAATGGTCTTACCAGTGAGAGTCTTGACGAAAATTTGCAT 15294 >seq3863 Length=144211 Score = 136 bits (150), Expect = 9e-27 Identities = 133/169 (79%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||||||||| || || ||||| ||||| || || | ||||| Sbjct 119955 ACGAAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCACTCAAGG- 120013 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||||| || || || ||||| || || |||||||| |||||||||| | Sbjct 120014 TGCGACCATCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATAC 120073 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 |||||||||| || |||||||| || || || || |||||||||||||| Sbjct 120074 CTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 120122 >seq2553 Length=14598 Score = 131 bits (144), Expect = 4e-25 Identities = 149/196 (76%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 210866 TTCAAGAAGGGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTC 210925 |||||| |||| || | | ||| | |||||| | || || | |||||| ||||| || Sbjct 8242 TTCAAGGAGGG-TTCGATGATACCACCACGAAGACGGAGAACCAAGTGAAGGGTGGATTC 8184 Query 210926 TTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||| ||||| || || | ||| | | | || ||||| | || || || ||||| | Sbjct 8183 CTTTTGAATGTTGTAGTCGCTCAAAG-TACGACCGTCTTCTAATTGTTTACCGGCGAAAA 8125 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || ||||||||||||||||||| ||||||||||| || |||||||| || || || | Sbjct 8124 TGAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGT 8065 Query 211045 CGATGGTGTCAGAGCT 211060 | |||||||||||||| Sbjct 8064 CAATGGTGTCAGAGCT 8049 >seq2577 Length=30737 Score = 102 bits (112), Expect = 2e-16 Identities = 116/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 210866 TTCAAGAAGGGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTC 210925 |||||| |||| || | | ||| | |||||| | || || | |||||||||||| || Sbjct 19753 TTCAAGGAGGG-TTCGATGATACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTC 19811 Query 210926 TTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||| ||||| || || | ||| || | |||||||||| ||||| || || |||| Sbjct 19812 CTTTTGAATGTTGTAGTCGCTCAA-AGTACGACCATCTTCCAATTGCTTACCAGCAAAGA 19870 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||| ||||||||||||||||||| ||| || Sbjct 19871 TAAGACGTTGTTGGTCAGGAGGAATACCTACC 19902 >seq3464 Length=64949 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || ||||||||||| || || ||||| ||||| || || | ||| | Sbjct 37795 ACGAAGACGGAGAACCAGGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGCTCAA-AG 37853 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | | |||||||||| ||||| || || |||||||| |||||||||||||| || Sbjct 37854 TACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGGGG 37908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159084187434590