Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3946 188 6e-43 seq4556 161 8e-35 >seq3946 Length=52427 Score = 188 bits (208), Expect = 6e-43 Identities = 306/437 (70%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || || || |||||||| || || || || || |||| | ||||| | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA 4378 |||||| ||||||||||| ||||| | ||| ||| || || ||||| || | | Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAATTTTATCGAACCCAAGAGCAACCATAAG 26150 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||||| || ||||| || || || | ||| | | || || ||||| ||| Sbjct 26151 ACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAATCAATGC 26210 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 ||||||| || | || || || |||||||| || ||| ||||| | || ||||| Sbjct 26211 AACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTATAATATC 26270 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCC--AAACAATAAACACGCAAAA 4556 || | | || | | | || ||||| || ||| |||||| | ||| || ||| Sbjct 26271 CTTCACACGTTGTTG-GCTAGGTTGTTTACGAA-TATGAGTAAACAAAAGACAAGCGAAA 26328 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 || ||| | ||||||||| | | ||||| ||| ||| ||| || || |||||||| Sbjct 26329 TCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAACCGGGCATC 26388 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 ||||| | || ||||||||||| |||| |||||||| || ||||||||||| |||||| Sbjct 26389 AAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAATATACCTTCT 26448 Query 4677 ACGGCGGCAAACGCTAC 4693 || || ||||| || || Sbjct 26449 ACTGCAGCAAAAGCAAC 26465 >seq4556 Length=51470 Score = 161 bits (178), Expect = 8e-35 Identities = 301/437 (69%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || || || |||||||| || || || || ||||||| | || || | || Sbjct 9583 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGATCATGTC 9642 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA 4378 |||||| || || || ||||| || |||||| || || | ||||| || | | Sbjct 9643 CATAAAGTCGAATGGGTTAGTAGCATTGTAAATCTTGTCGAATCCAAGAGCGACCATGAG 9702 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGA-GTTCGCAGTTAATTCCAATTAATC 4437 || ||||| || ||||| |||||||| | ||| | | | || ||| || || || ||| Sbjct 9703 ACGATCAGCGACGAATTCGATATACTGACACATCAAGGTAGC-GTTCATACCGATCAATG 9761 Query 4438 TCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATAT 4497 ||||| || || | | || || |||||||| ||| ||||||||| || || | Sbjct 9762 CAACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACGGCTTCTACAATGATGT 9821 Query 4498 CTTTTATTTTATCTTTAGATGGTTTATTTACTAA-GTATCCAAACAATAAACACGCAAAA 4556 | || | | || | ||| || ||||| | || ||||| | ||| ||||| Sbjct 9822 CCTTGACGCGTTGTTGAC-TGGGTTGTTTACGGATGTGGGTGAACAAGAGACAGGCAAAG 9880 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||| || | |||||| || | | |||| ||| ||| ||| || || |||||||| Sbjct 9881 TCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAAACCGGGCATC 9940 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 ||||| | || || | |||||| || | ||| ||||| ||||||||||| |||||||| Sbjct 9941 AAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAAGATGCCTTCG 10000 Query 4677 ACGGCGGCAAACGCTAC 4693 || |||||||| || || Sbjct 10001 ACAGCGGCAAAGGCGAC 10017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427025835490478