Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1352 114 3e-20 seq2614 105 2e-17 seq2600 102 2e-16 seq2389 91.5 3e-13 seq2841 89.7 1e-12 seq3863 87.8 4e-12 >seq1352 Length=65141 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || ||||| || ||||| || ||||| | || ||||| | Sbjct 15088 CAAG-TGAAGGGTGGATTCCTTTTGAATATTGTAGTCACTCAAAGTACGACCGTCTTCCA 15146 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| | | ||| || || | | ||||| ||||| ||||||| Sbjct 15147 ATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTCCCTCCTTATCTTGAA 15206 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| |||||| |||| | ||| || ||| ||| ||||| | |||||| || || | Sbjct 15207 TCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTAATGGTCTTAC 15266 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||| ||||| | ||||| Sbjct 15267 CAGTGAGAGTCTTGACGAAAATTTGCAT 15294 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || |||||||||||||| || ||||| | || ||||| | Sbjct 15544 CAAG-TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACCGTCTTCCA 15602 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || ||||| || || | ||||| || | | || || ||||| ||||||| Sbjct 15603 ATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCTTGAA 15662 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| |||||| |||| | ||| || ||| ||| ||||| | ||| || || || | Sbjct 15663 TCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTCTTAC 15722 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||| | ||||| Sbjct 15723 CAGTCAAAGTCTTGACGAAAATTTGCAT 15750 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || |||||||||||||| || ||||| | || ||||| | Sbjct 16000 CAAG-TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCACTCAAAGTGCGACCGTCTTCCA 16058 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || ||||| || || | ||||| || | | || || ||||| ||||||| Sbjct 16059 ATTGTTTACCAGCGAAAATGAGACGTTGCTGATCAGGAGGAATGCCCTCCTTATCTTGAA 16118 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| |||||| |||| | ||| || ||| ||| ||||| | ||| || || || | Sbjct 16119 TCTTTTGCTTGACATTCTCAATGCTATCAGAAGACTCGACTTCCAAAGTGATGGTCTTAC 16178 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| ||||| | ||||| Sbjct 16179 CAGTCAAAGTCTTGACGAAAATTTGCAT 16206 >seq2614 Length=127402 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || ||||| ||||||||||| ||||| | |||||||| | Sbjct 59163 CAAG-TGGAGAGTGGATTCCTTTTGAATGTTGTAATCACTCAAAGTACGACCATCTTCGA 59105 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| | | ||||| || | | || |||||||| ||||||| Sbjct 59104 GCTGCTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAA 59045 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| ||||| |||| | || || ||| || ||||| | ||||| ||||| | Sbjct 59044 TCTTTTGCTTGACGTTCTCAATACTATCAGAAGATTCGACTTCCAAGGTAATGGTTTTAC 58985 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || ||||| | |||||| Sbjct 58984 CAGTAAGGGTTTTGACGAAAATCTGCAT 58957 >seq2600 Length=207564 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || || || ||||| || || |||||| ||| || | ||||||||||| Sbjct 124499 ATGGAGTGTTGATTCCTTTTGTATATTATAATCGCTTAATGTACGACCATCTTCTAGTTG 124440 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || |||||||| || || || || | | || ||||| || ||||||||||| Sbjct 124439 TTTGCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTT 124380 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| | || | | | || ||| || ||||| | || || |||||||| || Sbjct 124379 ACTTTTCACATTATCAATGGTATCGGAAGATTCAACTTCTAATGTGATTGTTTTGCCTGT 124320 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || | ||||| Sbjct 124319 AAGAGTCTTGACAAATATTTGCAT 124296 >seq2389 Length=30206 Score = 91.5 bits (100), Expect = 3e-13 Identities = 188/280 (67%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 115629 TTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGG 115688 || |||||| ||||| | | ||||| || ||| | || ||||||| ||| ||| Sbjct 12780 TTTTATGCCCTTTGGGTACCCGATCTCTTCATGCAACGTGTCAAGGACGGTGGAGATTGG 12721 Query 115689 AGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAG 115748 ||||||||||| |||||||| |||||| | | ||||||| ||| ||||||| | Sbjct 12720 TCTCTCTTTTGTCCTAATGAAGCACCTGGTTTGCAAGATGTTTGGGGTGATGAGTTTGTG 12661 Query 115749 AATCTTTACGAAAGGTACGAGAAAGAGGGAAGAGCCAAAAGGGTTGTGAAGGCGCAAGAC 115808 |||||| ||||| || || || |||||||| | | | | ||||| ||| | Sbjct 12660 GCTCTTTATGAAAGCTATGAACGCGAAGGAAGAGCGAGAGAGACAATTAAGGCACAAAAG 12601 Query 115809 CTTTGGCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTACAAA 115868 | ||| || |||| | | |||| | || ||| | || ||||| ||||| Sbjct 12600 TTATGGTATGCTATCTTGGAAGCACAAACTGAAACCGGTAATCCATTTATGCTCTACAAG 12541 Query 115869 GATGCAGTTTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908 ||||| | | ||||||||||||| | || || |||| Sbjct 12540 GATGCTTGTAATAGAAAGAGCAATCAGCAAAACTTGGGTA 12501 >seq2841 Length=27215 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| || || |||||||| || |||||||| ||| || | || ||||| || Sbjct 25455 ATGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGTACGACCCTCTTCAAGTTG 25514 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || || || || || || || | | ||| ||||| || ||||||||||| Sbjct 25515 TTTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTT 25574 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| || | || | | | || || || ||||| | || || || ||||| || Sbjct 25575 GCTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAATGTGATTGTCTTGCCTGT 25634 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || |||| ||||| Sbjct 25635 AAGAGTCTTGACAAAGATTTGCAT 25658 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || || |||||||| || |||||||| ||| || | || ||||| || | Sbjct 25690 TGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGTACGACCCTCTTCAAGTTGT 25749 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || || || || | | ||| ||||| || ||||||||||| Sbjct 25750 TTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTG 25809 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| || | || | | | || || || ||||| | || || || ||||| || Sbjct 25810 CTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAATGTGATTGTCTTGCCTGTA 25869 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || |||| ||||| Sbjct 25870 AGAGTCTTGACAAAGATTTGCAT 25892 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || || |||||||| || |||||||| ||| || | || ||||| || | Sbjct 25924 TGAAGCGTTGATTCTTTTTGTATATTGTAATCACTTAATGTACGACCCTCTTCAAGTTGT 25983 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || || || || | | ||| ||||| || ||||||||||| Sbjct 25984 TTACCAGCAAAAATTAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTG 26043 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| || | || | | | || || || ||||| | || || || ||||| || Sbjct 26044 CTTTTCACGTTATCAATGGTATCGGAGGATTCAACTTCTAATGTGATTGTCTTGCCTGTA 26103 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || |||| ||||| Sbjct 26104 AGAGTCTTGACAAAGATTTGCAT 26126 >seq3863 Length=144211 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || ||||| |||||||| || || || | |||||||| | Sbjct 119970 CAAG-TGAAGAGTAGATTCCTTTTGAATGTTGTAGTCACTCAAGGTGCGACCATCTTCCA 120028 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| |||||||| || || | || || || | | || |||||||| ||||||| Sbjct 120029 ATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAA 120088 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA--GAGTAAT 152068 | ||||| |||||| | || | | |||| || || | | | ||| ||||||| Sbjct 120089 TCTTTTGCTTGACATTGTCAATGGTGTCAGAGCTGTTTTATACAAGTGAGTAAT 120142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153753299319786