Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3946 178 1e-39 seq4556 129 6e-25 >seq3946 Length=52427 Score = 178 bits (196), Expect = 1e-39 Identities = 345/506 (68%), Gaps = 25/506 (5%) Strand=Plus/Plus Query 23220 TTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTC 23279 |||||| || ||| || |||| ||||| || ||||| || | | ||| || | || Sbjct 26031 TTGATAATCAGAAACGCGCTTTTCAAAAAAGTTGGTCTTTCCTTGCAGTGAAATCATATC 26090 Query 23280 CATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA-------CATGATAATTCCT 23332 |||||| ||||| ||||| | | |||| | |||| || || | | | Sbjct 26091 CATAAAGTCAAACGGATTCGTTGCCATATAAAT---TTTATCGAACCCAAGAGCAACCAT 26147 Query 23333 TTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTA 23392 ||| | ||| || || |||||||| ||||||||||||||| | | || ||||| | Sbjct 26148 ----AAGACGATCAGCAACGAATTCAATGTATTGACACATCAAAGTAGAATTCATACCAA 26203 Query 23393 TTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAA 23452 | | | || || | ||||| ||||||| || ||||||| ||||| || | | Sbjct 26204 TCAATGCAACAGGTAATGCATCGGTTAAGAATTCTTGTTCAATGCCTACAGCTTCCATTA 26263 Query 23453 TTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTA--AATACT--TAAACAATAAA 23508 | || | | | || || |||||| | |||| |||| ||||||| | | Sbjct 26264 TAATATCCTTCACACGTTGTTGGCTAGGTTG----TTTACGAATATGAGTAAACAAAAGA 26319 Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || || ||||| ||| || ||||| || | || ||||||||||||| ||| || || Sbjct 26320 CAAGCGAAATCGGTATGAAGACCTTCGTCACGACAAATCAATTCATTACTAAAAGTCAAA 26379 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| || || ||||| |||| |||||| || | ||||||||| ||||||||||| Sbjct 26380 CCGGGCATCAAACCACGTTTCTTAAGCCAAAAAATAGAAGCAAATGAGCCGGAAAAGAAT 26439 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 ||||| || || || ||||| || |||||||| | |||| | || || | ||||| Sbjct 26440 ATACCTTCTACTGCAGCAAAAGCAACAAGACGCTCAGCAAA---GGAATCATTAGCAGAA 26496 Query 23689 ATCCAtttttttGTCCAATTAGCCTT 23714 |||||||| | ||| | |||||| Sbjct 26497 ATCCATTTGAAAGCCCAGTCAGCCTT 26522 Score = 163 bits (180), Expect = 3e-35 Identities = 242/340 (71%), Gaps = 15/340 (4%) Strand=Plus/Plus Query 23732 TTGTTTCAATTGCTTTTAAGAGAAAAGT-----TTTTTCTTCATTATCTGTTATATATGT 23786 |||| ||||| || ||||||||| ||||||||||| |||| ||||||| || Sbjct 26598 TTGTATCAATAGC-----AGAGAAAAGCATTTCTTTTTCTTCATCATCTTTTATATAGGT 26652 Query 23787 ATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATA 23846 |||||| | | ||| || |||| || |||||||||||||| || ||||| ||||| Sbjct 26653 ATCAATCAAAAGACTGTATGTTTCTGAGTGAATATTTTCAATCATGATTTGAAAGCCATA 26712 Query 23847 AAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTT 23906 ||||||| ||||||||| | || || |||| | |||| ||| | |||||||| || Sbjct 26713 AAAACATTTAGCTTCAGGAATTTTGACTTCATCACAAAAGTTTTGCACCAAATTTTCATT 26772 Query 23907 AACAATACCATCACTAGC-AGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA- 23964 |||||||||||| ||| ||||||||||| | ||| |||||| || ||| Sbjct 26773 TACAATACCATCA-GAGCTGGCAAAGAAAGCCAAAACGCGAGAAATAAAAAATCGCTCAT 26831 Query 23965 --TCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTG 24022 ||||| | |||| ||||||||| |||| | |||||| | ||| ||| ||| Sbjct 26832 TCTCAGTCATTTTGTTTTCCCAATCATTTTGATCTCTACTTAAATCTATTTCTTCAGCTG 26891 Query 24023 TCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAAT 24062 |||||||| ||| || |||||| | | ||||||| Sbjct 26892 TCCAAAAAGATGCTTCTGCCTTCTTATAGAATTGCCAAAT 26931 >seq4556 Length=51470 Score = 129 bits (142), Expect = 6e-25 Identities = 344/522 (66%), Gaps = 19/522 (4%) Strand=Plus/Plus Query 23159 TTTAAAAATCTTCATCTAAAGTGAATTTC------ACTGCTTTATCACTATTCATAACAC 23212 |||||||||| |||| ||||||||| || || | | | | | ||||| |||| Sbjct 9519 TTTAAAAATCAGCATCCAAAGTGAATGTCTTTTCAACAGGTGTCT---TGTTCATGACAC 9575 Query 23213 CCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATA 23272 | |||||| || |||||| |||| ||||| || ||||| || | | || | Sbjct 9576 CAGCACGTTGATAATCAGAAACACGCTTTTCAAAAAAGTTGGTCTTGCCTTGAAGGGAGA 9635 Query 23273 TATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTAC--ATGATAATTC 23330 | | |||||||| || ||||| |||| || ||| || | ||| | || | | Sbjct 9636 TCATGTCCATAAAGTCGAATGGGTTAGTAGCATTGTAAAT--CTTGTCGAATCCAAGAGC 9693 Query 23331 CTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACC 23390 | || | ||| || || ||||| ||||| ||||||||||| | ||| ||||| Sbjct 9694 GACCATGAGACGATCAGCGACGAATTCGATATACTGACACATCAAGGTAGCGTTCATACC 9753 Query 23391 TATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTT 23450 || | | || || | ||||| | | |||| || ||| || || || ||| Sbjct 9754 GATCAATGCAACAGGCAGAGCATCCGACAGGAATTCTTGTTCGATACCGACGGCTTCTAC 9813 Query 23451 AATTATTTGAACAATAAC---TTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAA 23507 ||| || | | | || || || ||| ||| | | | | | ||||| | Sbjct 9814 AATGATGT---CCTTGACGCGTTGTTGACTGGGTTGTTTACGGATGTGGGTGAACAAGAG 9870 Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||| ||||| ||| || || |||||||| | || |||||||||||| ||| || || Sbjct 9871 ACAGGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTACTAAAGGTCAA 9930 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627 || ||||| || || ||||| || | |||||| || | || ||||| || |||||||| Sbjct 9931 ACCGGGCATCAAACCACGTTTCTTTAACCAAAAGATGGAGGCGAATGAGCCAGAAAAGAA 9990 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA 23669 || || || ||||| |||||||| || |||||| | |||| Sbjct 9991 GATGCCTTCGACAGCGGCAAAGGCGACCAGACGTTCAGCAAA 10032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/181 (72%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 23761 TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATA 23820 ||||||| |||||| | || || |||||||| | | ||| || |||||| |||||| Sbjct 10170 TTTTCTTGGTTATCTTTAATGTAGGTATCAATCAAGAGACTGTAAGTTTCAGCATGAATG 10229 Query 23821 TTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTA 23880 |||||||| ||||| || |||||||||||| | ||||| | | | || |||| | Sbjct 10230 TTTTCAATCATGATCTGGAAACCATAAAAACATTTGGCTTCGGGAATCTTGACTTCATCA 10289 Query 23881 AAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAG-CAAG 23939 |||| ||| | || || || || || |||||||| |||||||||| | |||| Sbjct 10290 CAAAAGTTTTGTACCAAGTTCTCATTCACGATACCATCTGAGCCAGCAAAGAAGGCCAAG 10349 Query 23940 A 23940 | Sbjct 10350 A 10350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521458236072400