Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6030 122 2e-22 seq3781 122 2e-22 >seq6030 Length=25879 Score = 122 bits (134), Expect = 2e-22 Identities = 465/718 (65%), Gaps = 24/718 (3%) Strand=Plus/Minus Query 281469 ATTTTACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATC 281528 ||||| |||||||| || | ||||| || |||| | ||| | | ||||| || Sbjct 16980 ATTTTTCCTTTGAAACCTCTATACCAAGGGGTCATAGCAACGGGATTTTCTCCCTTCATT 16921 Query 281529 AAACGCTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAA 281588 ||||| || ||| || || ||||| | ||||| || |||||||||||||| |||| Sbjct 16920 AAACGACGCAAGTTATCAACAATGTCGTATGGATTGTAGTTGGGAATGTTAGTACTCCAA 16861 Query 281589 CCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACAT 281648 || ||||||||||| || ||||| | | || | || | |||||| | || || Sbjct 16860 CCAGTTCCAATACCTTCAGAGCCATTAATGAGTATCATTGGAACAATAGGAATGTACCAA 16801 Query 281649 TCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAG-AAG--GTTATCATCTGTA 281705 | ||||||| ||| | ||||||||| | ||| | || ||| | ||||||| | Sbjct 16800 TTAGGTTCAACTTTTTTACCATCATCCTCGGTATATTCAAGTAAGGAGCTATCATCAGGG 16741 Query 281706 TCGACGAAAACCTGTCG--CGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCG 281763 | || | | | ||| || |||| ||| | ||||| || || | || || | Sbjct 16740 TTGAAG-ATTGTTCTCGAAAGT-TTAG---CAAGTGTAGTGAAAATGTAACGAGCGCTTG 16686 Query 281764 CGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAA 281823 | |||||||||||| || | || || || |||||||| | || || || | Sbjct 16685 CAGAGTCTTTACCACCTTGTAATCTAGAACCGAACTGACCTTTAGGTTCTAAAAGATTGA 16626 Query 281824 TGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTG---AAGCGATA 281880 || ||||| || ||| |||| | ||||| || |||| | || ||| ||| Sbjct 16625 GATTGTTGCTTCCTACGAAATCATAAGCCA---TGGCGATAATAGATTGGGTAAGAGATT 16569 Query 281881 CCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCA 281940 ||||| || || || || | || || | | ||||||| | || || || | Sbjct 16568 GTTCACCATGATGGTAAGCAGTTTGCTCAGAGATATAACCAGCAAGAGCAGCGACTTTGA 16509 Query 281941 CGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGA 282000 || | ||||||| | |||||| || ||| | | ||| || |||| ||| || | Sbjct 16508 TTTCACCTTTCAAGTTTCTTTTGAAGCAGCCATAAATGATTTTGCGCTGAGTAGGTTTAA 16449 Query 282001 AACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCATACCGCGA----GAACAAAATA 282056 | |||||||| ||||| || ||| | || ||| || | || | | | |||| | Sbjct 16448 ACCCATCAACAACAGATGGGATGGATC-TTGCAG--TAT-CTGCAATACTGTATAAAACA 16393 Query 282057 AGTTCCTTGTCAATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGGTTT 282116 |||||||||| |||||||||| || |||| || ||||| ||| ||| | | || Sbjct 16392 AGTTCCTTGTTAATGAAGTCGCCGACAGGAATTTCAGGCTTAGTGTTGTCCAAATAAGTT 16333 Query 282117 CCCGGCTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCCCGAGTCTTGTTGAAAG 282174 || || | || | | | ||| || || || || || || | || || ||||||| Sbjct 16332 CCAGGTACATACGAGTTAAGCCATTCTTTACGGTCATCAGCTCTAGCTTTATTGAAAG 16275 >seq3781 Length=11772 Score = 122 bits (134), Expect = 2e-22 Identities = 465/718 (65%), Gaps = 24/718 (3%) Strand=Plus/Plus Query 281469 ATTTTACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATC 281528 ||||| |||||||| || | ||||| || |||| | ||| | | ||||| || Sbjct 8938 ATTTTTCCTTTGAAACCTCTATACCAAGGGGTCATAGCAACGGGATTTTCTCCCTTCATT 8997 Query 281529 AAACGCTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAA 281588 ||||| || ||| || || ||||| | ||||| || |||||||||||||| |||| Sbjct 8998 AAACGACGCAAGTTATCAACAATGTCGTATGGATTGTAGTTGGGAATGTTAGTACTCCAA 9057 Query 281589 CCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACAT 281648 || ||||||||||| || ||||| | | || | || | |||||| | || || Sbjct 9058 CCAGTTCCAATACCTTCAGAGCCATTAATGAGTATCATTGGAACAATAGGAATGTACCAA 9117 Query 281649 TCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAG-AAG--GTTATCATCTGTA 281705 | ||||||| ||| | ||||||||| | ||| | || ||| | ||||||| | Sbjct 9118 TTAGGTTCAACTTTTTTACCATCATCCTCGGTATATTCAAGTAAGGAGCTATCATCAGGG 9177 Query 281706 TCGACGAAAACCTGTCG--CGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCG 281763 | || | | | ||| || |||| ||| | ||||| || || | || || | Sbjct 9178 TTGAAG-ATTGTTCTCGAAAGT-TTAG---CAAGTGTAGTGAAAATGTAACGAGCGCTTG 9232 Query 281764 CGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAA 281823 | |||||||||||| || | || || || |||||||| | || || || | Sbjct 9233 CAGAGTCTTTACCACCTTGTAATCTAGAACCGAACTGACCTTTAGGTTCTAAAAGATTGA 9292 Query 281824 TGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTG---AAGCGATA 281880 || ||||| || ||| |||| | ||||| || |||| | || ||| ||| Sbjct 9293 GATTGTTGCTTCCTACGAAATCATAAGCCA---TGGCGATAATAGATTGGGTAAGAGATT 9349 Query 281881 CCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCA 281940 ||||| || || || || | || || | | ||||||| | || || || | Sbjct 9350 GTTCACCATGATGGTAAGCAGTTTGCTCAGAGATATAACCAGCAAGAGCAGCGACTTTGA 9409 Query 281941 CGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGA 282000 || | ||||||| | |||||| || ||| | | ||| || |||| ||| || | Sbjct 9410 TTTCACCTTTCAAGTTTCTTTTGAAGCAGCCATAAATGATTTTGCGCTGAGTAGGTTTAA 9469 Query 282001 AACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCATACCGCGA----GAACAAAATA 282056 | |||||||| ||||| || ||| | || ||| || | || | | | |||| | Sbjct 9470 ACCCATCAACAACAGATGGGATGGATC-TTGCAG--TAT-CTGCAATACTGTATAAAACA 9525 Query 282057 AGTTCCTTGTCAATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGGTTT 282116 |||||||||| |||||||||| || |||| || ||||| ||| ||| | | || Sbjct 9526 AGTTCCTTGTTAATGAAGTCGCCGACAGGAATTTCAGGCTTAGTGTTGTCCAAATAAGTT 9585 Query 282117 CCCGGCTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCCCGAGTCTTGTTGAAAG 282174 || || | || | | | ||| || || || || || || | || || ||||||| Sbjct 9586 CCAGGTACATACGAGTTAAGCCATTCTTTACGGTCATCAGCTCTAGCTTTATTGAAAG 9643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057740822968310