Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2855 179 4e-40 >seq2855 Length=12074 Score = 179 bits (198), Expect = 4e-40 Identities = 585/895 (65%), Gaps = 29/895 (3%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| ||||| ||||| ||||| || |||||||| ||||| | | ||| || | | Sbjct 4922 TTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCATAT 4981 Query 16734 CCATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATT 16792 |||||||||| || || || || | ||| ||| ||| ||| | || || | Sbjct 4982 CCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTG-GAGAAGCCAAGAGACAAAAGC 5040 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 || | || || |||||||| || || ||| |||||| | || ||||||||||||||| Sbjct 5041 AAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAAGA 5100 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 || || | | || || || ||| ||| ||||| ||| || || || ||| Sbjct 5101 GAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAATG 5160 Query 16913 -CTAGCAACTCGTTCCT-CGGACGGTGTATGTTTAAGATGT--TTAAACATCAGACATGC 16968 ||| | ||||| || | || ||| | ||| | || || || |||| || || | Sbjct 5161 GCTAATA--TCGTTTCTTCAGAAGGTTT--GTTGACGAGGTATTTGAACAATAGGCAGCC 5216 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 ||||||| || | || || ||||| | |||||||||||| || || || | ||||| Sbjct 5217 GAAATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGG 5276 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| || || || || | ||| || || |||||||| || ||| |||||||| || Sbjct 5277 CATAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCC 5336 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT----TGTTACGAA 17144 || ||| ||| || |||| ||| | | || | || || | || Sbjct 5337 TTCTACGACACAAAAAGCAGCCAATCTTTCACCAAA----GCTTTTTCTAGAGTCATCAA 5392 Query 17145 TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA 17204 |||||| | |||| | || |||| ||||||||| || ||| || ||| || | Sbjct 5393 TCCATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGA 5452 Query 17205 ATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || | ||||||| | || || | || || || || || || | |||||| Sbjct 5453 GTAAGAAGTCTCTTTCAACATTA--TCTTTGATGTATGTGTCAATAAGCATAGAGTACAT 5510 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 |||| ||| || || || || ||| || || |||||||| || |||||||| | || Sbjct 5511 TTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGAT 5570 Query 17323 TTGAACTTCCACGTAGAATCGTT--CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 ||| ||||| ||| | ||| | | || |||||||| ||||| || || || || Sbjct 5571 TTGGACTTC--GGTACCAAAGTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCA 5628 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG---CGC 17437 ||||| || || | || | || |||||||| |||||| || || | | Sbjct 5629 GCGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCC 5688 Query 17438 CAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCC 17497 |||| | || | || | ||| |||||||| ||||| ||||| || | || Sbjct 5689 CAGTGTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCT 5748 Query 17498 TTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTAT 17552 ||||| ||||| | ||| || || | ||| ||| ||||| | ||| | |||| Sbjct 5749 TTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTAT 5803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517505897783160