Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2855 178 1e-39 >seq2855 Length=12074 Score = 178 bits (196), Expect = 1e-39 Identities = 574/877 (65%), Gaps = 22/877 (3%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| || || ||||| ||||| ||||||||||| || || | | ||| || | | Sbjct 4922 TTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCATAT 4981 Query 15972 CCATAAAATCAAAGGGATTAGT-AGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 |||| ||||| || || || || | ||| ||| | || ||| | || || | || Sbjct 4982 CCATGAAATCGAATGGGTTGGTGACGTGATAATGT-TTGGAGAAGCCAAGAGACAAAAGC 5040 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 || | || || |||||||| || || || |||||| | || ||| ||||||||||| Sbjct 5041 AAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAAGA 5100 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || || | | | ||||| |||| ||||||||| ||| || || || || Sbjct 5101 GAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAATG 5160 Query 16151 TCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 | |||| | |||||| ||| | | | |||| ||| |||| ||| || |||| Sbjct 5161 GC-TAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGAA 5219 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 ||| || || ||||| ||||| | |||||||||||| || ||||| | || ||||| Sbjct 5220 ATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCAT 5279 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 || || || || | |||||| || || || || || || |||||||| || || Sbjct 5280 AAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTTC 5339 Query 16330 AACAGATGC-AAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT-TA---TTACGAATC 16384 || || | |||||| |||| ||| | ||| | || || | | |||| Sbjct 5340 TAC-GACACAAAAAGCAGCCAATCTTTC----ACCAAAGCTTTTTCTAGAGTCATCAATC 5394 Query 16385 CATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAAC 16444 |||| | |||| | || |||| ||||| || || ||| || ||| || | Sbjct 5395 CATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGT 5454 Query 16445 AATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCT 16504 || ||| |||| | |||| | || || || ||||| || | | ||||||||| Sbjct 5455 AAGAAGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCG 5514 Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564 ||| || || || || ||| || || || || || || || || || | ||||| Sbjct 5515 CTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGG 5574 Query 16565 ACTTCCACGTAAAATCGTT--CCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAA 16622 ||||| ||| | ||| | | ||||| || || |||||||| ||||| ||||| | Sbjct 5575 ACTTC--GGTACCAAAGTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGA 5632 Query 16623 AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG---AATATGCCAAT 16679 | || || | |||| || |||||||| |||||| | || || | | ||| | Sbjct 5633 AGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGT 5692 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739 || || | || | ||| |||||||| ||||| || || || | || |||| Sbjct 5693 GTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTT 5752 Query 16740 TATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775 | ||||||| ||| || || | ||| || |||||| Sbjct 5753 TGTACATTTGCCATATTTCGTGCCATTTTATTGGGAA 5789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511375168122840