Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2855 244 1e-59 seq23 134 2e-26 >seq2855 Length=12074 Score = 244 bits (270), Expect = 1e-59 Identities = 595/894 (67%), Gaps = 12/894 (1%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||||||||| || | || || ||||| || || ||||| || |||| | || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 |||||||||||| |||| ||||| || | ||| || || | | |||| | ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATA-ATGTTTGGAGAAGCCAAGAGACAAAA 5038 Query 23963 -CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 ||| | || || ||||| || || || ||| | | | |||||||||||||| Sbjct 5039 GCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAA 5098 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | || || | | |||| | ||||||||||| || | || ||||| | | || Sbjct 5099 GAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAA 5158 Query 24082 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 24141 | | | || ||||||||| ||| | | | | ||| |||| | || ||| Sbjct 5159 TGGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGA 5218 Query 24142 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 24201 ||||| ||| ||||| || ||||||| || | |||||| || || || || ||||||| Sbjct 5219 AATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCA 5278 Query 24202 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 24261 | |||||||||||||| ||||| || |||| || || || ||| ||||| || |||| Sbjct 5279 TAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTT 5338 Query 24262 CTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT---GTCATGTATCCACT 24318 |||| | ||| ||| | |||||| ||| | | || ||||| ||||| | Sbjct 5339 CTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAGTCATCAATCCATT 5398 Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378 | ||||| | ||||| || |||| || || || | | || ||||| | | Sbjct 5399 CAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAGA 5458 Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438 ||| | ||||| | ||||||| | ||||| ||||| | | | |||||||| | Sbjct 5459 AGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTGT 5518 Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498 | || |||||||| ||||| || ||||| ||||| | || || | || || |||| Sbjct 5519 GGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACTT 5578 Query 24499 CTATACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 24556 | ||| ||| ||| | | | ||||| || || || || ||||| || || || || Sbjct 5579 CGGTACCAAA--GTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAGAA 5636 Query 24557 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG--TTTATTCCAATCATTG 24614 || | | | ||| || ||||| |||||| ||||| | | |||| | ||| Sbjct 5637 GGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGTGTTG 5696 Query 24615 A-TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 | | || | ||| | ||| |||||||| || ||||| || || || || ||||| || Sbjct 5697 AGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTTGTA 5756 Query 24674 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 ||| | ||| || || || ||| ||||| || | ||||| ||||||||||| Sbjct 5757 CATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATT 5810 >seq23 Length=21893 Score = 134 bits (148), Expect = 2e-26 Identities = 570/885 (64%), Gaps = 29/885 (3%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 || |||||||| || || | || || ||||| | |||||||| ||| || | Sbjct 4514 ATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCG 4573 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 |||||||| || || || || ||| |||| ||||||||||| |||||||| |||| || Sbjct 4574 TTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATA 4633 Query 53879 GCTTTCCAGAC------GACAC-GA-GCCTTTATTAT--AGATTTGTATCTCTTTTCTCT 53928 || | ||||| | || || || ||| | ||| | || | || || Sbjct 4634 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCT---TCAGTGTTTTCG 4690 Query 53929 TTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 53988 | | | ||| ||| | || | | |||| || |||||||| | | | |||||| Sbjct 4691 TACTT-TAG-GTAGAGC-TCAT-CGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGC 4746 Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 ||||| || || | || ||||| || |||| ||| || || ||| || || || Sbjct 4747 TTCATGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTC 4806 Query 54049 AGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 54107 |||||||||||| | || || || || | || | || ||| || || || ||| | Sbjct 4807 AGGAATCCAAAGGCCGTAGAACAAG-TCACGGGCGCGATTTTCTTCTTTACCGTGATTTT 4865 Query 54108 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA 54167 || | | | | || | | ||| ||||||||||| ||||| | || |||| | Sbjct 4866 TTCTCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGG 4925 Query 54168 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 54227 | || || |||||||| || || ||||| | ||||| |||||| | || | ||| | Sbjct 4926 CGCCTGGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGA 4985 Query 54228 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 54287 |||||||| || || ||||| | ||| || || || | || ||| ||| | || | Sbjct 4986 GCATTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGC 5045 Query 54288 GAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 54347 | ||||| || || || || || || || ||| || ||| || || | Sbjct 5046 GGATATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGG 5105 Query 54348 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 54407 | |||||||| || || || ||| ||||| ||| | || | |||||| | Sbjct 5106 AGATAGTATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAGAAACAG---G 5162 Query 54408 ACATTTGGTGA---CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 54464 | || | ||| ||| ||||||| | || || | ||||||||| || || ||||| Sbjct 5163 AGCTTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAAA 5222 Query 54465 ATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTC 54524 | || || | || | ||| || | ||| || || | | ||| ||| || | Sbjct 5223 AGCGTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGGATAC 5282 Query 54525 C--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 | |||| ||| ||||| | | || ||||||||||||| ||| || | | ||| Sbjct 5283 CAATACT--GACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACTTT 5340 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 || | ||| ||| |||| | ||||| |||||||| ||||| || Sbjct 5341 GAGAAGGTAAGATCTTTCGAGGGTTTTGAAACCAAAGTAGTTATA 5385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 333/520 (64%), Gaps = 11/520 (2%) Strand=Plus/Plus Query 52789 TATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATA 52848 || ||||| | ||| | ||||||| || | | ||| || || || || | || || Sbjct 3409 TACTTTATTATGGTCGATAGTGAATTTGATAGCATCGGCAGCAGGCTTGGTTCTGAGGTA 3468 Query 52849 GTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA 52908 |||||| || || || | || |||| || ||||| ||||| || ||||| Sbjct 3469 GTACATGCCTGTCTTCAATCCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGTTTTTG 3528 Query 52909 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 52968 ||| | || | | || || ||||| | ||||| |||||||||||| | ||||| | Sbjct 3529 GTAATTTGGGTTGTCCATGTGAATATTGAGGGATTGGCTTTGATCGATGTAAGCTCCGCG 3588 Query 52969 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCG 53028 |||||||| | | |||||| | |||||| |||||| ||| |||||| || | | | Sbjct 3589 GTCTGCAGAAAGATCTATGATAGACTTTTGCTTAATTTCATAAACAGTTTTGTAGAGTTG 3648 Query 53029 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATAGATCCACCATCTACCATAATCCT 53085 || | || ||||| | | | | | | || ||||||||| | | || || Sbjct 3649 TTTCAAGTCATCTGGGATTTGGGGAAGTGCTTGGATAGATCCATTGTGAGCGATTAT--- 3705 Query 53086 ATTCTTGA----TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 53141 || |||| | |||||| ||| || | | |||| | | | | | Sbjct 3706 -TTGTTGACGGGTGTCATCAGACCACAAACCGCGTTTTACTAAATCACGCAATAACCAAG 3764 Query 53142 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 53201 | |||||||| || |||||||||| | || | ||||||||||| || ||| |||| Sbjct 3765 GGTTAACTACCTGGAATTCTCCAGCAAGAACGCGACGAGTGTAAATGTTTGAGGTGTACG 3824 Query 53202 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 | || | | || || ||||||||||| | || || || || ||||| || || | Sbjct 3825 GCTCAAAGCATTCGTTGAAGCCCAAAATTTGGGATGTGGAGGCTGTAGGCATGGGAGCGA 3884 Query 53262 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 53301 || | ||||| | |||||| || |||| || || Sbjct 3885 GCAGGAGGGAGTTTCTGACGCCGTATTTTTTGATGTTTTC 3924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593676054131760