Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3494 89.7 6e-13 seq1799 89.7 6e-13 seq719 89.7 6e-13 >seq3494 Length=9582 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCC 145742 ||||| || | |||||||||||| || |||| ||| |||| | || | | ||| | ||| Sbjct 9051 AGGGGGTCAATGTGGTTGAGGTACACATGCGAGTCGCCCATGCAGTAG-TAAAGCTTCCC 8993 Query 145743 GGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTT 145802 ||||| || || |||| || |||| | | ||| |||| || ||| ||| || || Sbjct 8992 GGGCTTGATTCCAGTGACATGAGCGATTAGGATGGTTAGCAAGGCGTACGAGGCGATATT 8933 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCT 145858 ||| || || || |||||||| || | ||||| ||||| | |||||| ||||| Sbjct 8932 GAATGGGACGCCGAGCCCCATATCACAGGAGCGTTGGTAGAACTGGCAATCGAGCT 8877 >seq1799 Length=18188 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCC 145742 ||||| || | |||||||||||| || |||| ||| |||| | || | | ||| | ||| Sbjct 3073 AGGGGGTCAATGTGGTTGAGGTACACATGCGAGTCGCCCATGCAGTAG-TAAAGCTTCCC 3131 Query 145743 GGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTT 145802 ||||| || || |||| || |||| | | ||| |||| || ||| ||| || || Sbjct 3132 GGGCTTGATTCCAGTGACATGAGCGATTAGGATGGTTAGCAAGGCGTACGAGGCGATATT 3191 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCT 145858 ||| || || || |||||||| || | ||||| ||||| | |||||| ||||| Sbjct 3192 GAATGGGACGCCGAGCCCCATATCACAGGAGCGTTGGTAGAACTGGCAATCGAGCT 3247 >seq719 Length=29239 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCC 145742 ||||| || | |||||||||||| || |||| ||| |||| | || | | ||| | ||| Sbjct 23671 AGGGGGTCAATGTGGTTGAGGTACACATGCGAGTCGCCCATGCAGTAG-TAAAGCTTCCC 23613 Query 145743 GGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTT 145802 ||||| || || |||| || |||| | | ||| |||| || ||| ||| || || Sbjct 23612 GGGCTTGATTCCAGTGACATGAGCGATTAGGATGGTTAGCAAGGCGTACGAGGCGATATT 23553 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCT 145858 ||| || || || |||||||| || | ||||| ||||| | |||||| ||||| Sbjct 23552 GAATGGGACGCCGAGCCCCATATCACAGGAGCGTTGGTAGAACTGGCAATCGAGCT 23497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590031533733480