Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4232 118 1e-21 seq2855 104 2e-17 seq2055 96.9 4e-15 >seq4232 Length=1601 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||| ||| | || |||||| | || Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| | || |||| ||||| || || ||||| ||||||| Sbjct 115 GACACTATTGACAACG-TCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCA 173 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || |||||||| || || |||| || || | ||||||||| Sbjct 174 GCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAA 233 Query 40869 CATCCAGAAGGA 40880 ||||| || || Sbjct 234 AATCCAAAAAGA 245 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||| ||| | || |||||| | || Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| | || |||| ||||| || || ||||| | ||||| Sbjct 343 GACACTATTGACAACG-TCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCA 401 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || |||||||| || || |||| || || | ||||||||| Sbjct 402 GCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAA 461 Query 40869 CATCCAGAAGGA 40880 |||||| || || Sbjct 462 CATCCAAAAAGA 473 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||| ||| | || |||||| | || Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| | || |||| ||||| || || ||||| | ||||| Sbjct 571 GACACTATTGACAACG-TCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCA 629 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || |||||||| || || |||| || || | || ||||| Sbjct 630 GCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAA 689 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| || || | || || ||| | ||| Sbjct 690 CATCCAAAAAGAATCTACTCTTCATTTGGTG 720 >seq2855 Length=12074 Score = 104 bits (114), Expect = 2e-17 Identities = 391/606 (65%), Gaps = 13/606 (2%) Strand=Plus/Minus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 |||| ||| | ||||| ||| ||| | || || |||| ||||||||||| || || | Sbjct 5800 GGTTTGTGCTCTTCCCAATAAAATGGCACGAAATATGGCAAATGTACAAAAAAGCTGAAG 5741 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCT 116723 | |||||||| || || || || || ||||| | ||||| ||||||| | Sbjct 5740 CCAGTTTCTGGACTGTTGAAGAAGTCGATCTGTCTCATGACACTCAACACTGGGAAAACA 5681 Query 116724 TG--AAC-GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCG 116780 | ||| || ||||| | |||||||||| || | || ||||| ||||| || || | Sbjct 5680 AGCTAACTGATAACGAAAGGTATTTCATCAAAAACATCCTCGCCTTCTTCGCTGCTAGTG 5621 Query 116781 ACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840 | || ||||||||||| || || |||| || | | || || || | | || | Sbjct 5620 ATGGTATCGTCAACGAAAACCTTGTCGCTAACTTTGGTACCGAAGTCCAAATCCCAGAAG 5561 Query 116841 CGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGA 116900 | || || || ||||| || || || || || || | ||| |||||||| || | Sbjct 5560 CCCGCTGTTTTTACGGTTTCCAAATAATGATTGAAAATATCCACAGCGAAATGTACTCTA 5501 Query 116901 CCCTCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCC 116956 || || ||||| ||| | | | | | |||| || | || | || ||| Sbjct 5500 TGCTTATTGACACATACATCAAAGATAATGTTGAAAGAGA--CTTC--TTACTCAATGCC 5445 Query 116957 ATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGC 117016 | | | || || ||| | || | ||||| | ||||| || ||||| | | | Sbjct 5444 GTACAAAACATCCCCTGCATAAAGAAAAAGGCTAACTGGGCCCTTGAATGGATTGATGAC 5385 Query 117017 -AGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTT 117075 ||| | ||| || || | ||| || || | ||| || ||| | ||||| Sbjct 5384 TCTAGAAAAAG-CTTTGGTGAAAGATTGGCTGCTTTTTGTGTCGTAGAAGGCATATTCTT 5326 Query 117076 TTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGAC 117135 ||| ||||||||||| || |||||||| || || ||||| |||||||| || || Sbjct 5325 CAGTGGCTCCTTCGCCGCCATCTTCTGGCTCAAAAAGCGTGGCCTTATGCCCGGTCTTAC 5266 Query 117136 TTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 |||| ||||| || |||| || || || ||||| || ||| || | ||| | | Sbjct 5265 TTTCTCAAACGAACTTATCTGTAGAGATGAAGGTCTTCACACCGATTTCGGCTGCCTATT 5206 Query 117196 GTTCAA 117201 |||||| Sbjct 5205 GTTCAA 5200 >seq2055 Length=5446 Score = 96.9 bits (106), Expect = 4e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || || ||||| || || ||||| ||||||||| | || || ||| | Sbjct 140 AAAATGCAAATTTTTGTCAAAACTCTTACAGGCAAGACCATCACCCTTGAGGTTGAATCT 81 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | |||| | ||| ||||||||| ||||| || || ||||| | || Sbjct 80 TCCGACACTATTGACAACGTT-AAGCAAAAAATTCAAGACAAGGAAGGAATCCCACCAGA 22 Query 40806 CCAGCAACGACTCATCT 40822 ||||||||| ||||||| Sbjct 21 CCAGCAACGTCTCATCT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515179676247120