Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq253 104 3e-17 seq5784 100 4e-16 seq2842 100 4e-16 seq4232 89.7 8e-13 >seq253 Length=26518 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||||| ||||| || | |||||||| || || ||||| || || Sbjct 7838 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAG 7779 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || ||||| || || || ||||| | |||||||||||| |||||| Sbjct 7778 AGGGTACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 7719 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 7718 ATTCCTTCCTTATCTTG 7702 >seq5784 Length=6787 Score = 100 bits (110), Expect = 4e-16 Identities = 145/213 (68%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | |||||||||||| || || || || || | || | || ||| ||| Sbjct 534 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 593 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | ||| || || ||||||||||| | ||||||||| |||||||||||||| |||||||| Sbjct 594 AGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 653 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 || ||| ||| ||||||||| || || || |||||| Sbjct 654 ATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTA 713 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATTTTA 146281 ||||| | || || | || || |||||| || Sbjct 714 CCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 746 >seq2842 Length=19016 Score = 100 bits (110), Expect = 4e-16 Identities = 145/213 (68%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | |||||||||||| || || || || || | || | || ||| ||| Sbjct 535 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 594 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | ||| || || ||||||||||| | ||||||||| |||||||||||||| |||||||| Sbjct 595 AGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 654 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 || ||| ||| ||||||||| || || || |||||| Sbjct 655 ATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTA 714 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATTTTA 146281 ||||| | || || | || || |||||| || Sbjct 715 CCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 747 >seq4232 Length=1601 Score = 89.7 bits (98), Expect = 8e-13 Identities = 151/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||||||| | | |||||||| | |||||||||||| || || ||||| || Sbjct 737 CCACCTCTAAGACGAAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGAC 678 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || || || | |||||| || ||||| || | | |||||| || || || Sbjct 677 AAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGG 618 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| ||| || ||| ||| ||| Sbjct 617 ATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACT 558 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || || || ||||||| || |||| ||| |||||||| Sbjct 557 TCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743469362231040