Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4232 116 2e-21 seq253 107 1e-18 seq5784 89.7 3e-13 seq2842 89.7 3e-13 >seq4232 Length=1601 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | |||| |||||| || |||||||||||||||| |||| |||| Sbjct 494 AGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCT 435 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || ||||| || || ||||| || |||||||| || | | |||||||| Sbjct 434 TCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 375 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | | | || | |||| |||||||| || | || ||||| Sbjct 374 TGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTC 315 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| || || ||||| ||||| Sbjct 314 TTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | |||| |||||| || || ||||||||||||| |||| |||| Sbjct 266 AGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTCT 207 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || ||||| || || ||||| || |||||||| || | | |||||||| Sbjct 206 TCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCT 147 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | | | || | |||| |||||||| || | || ||||| Sbjct 146 TGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTC 87 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| || || ||||| ||||| Sbjct 86 TTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 >seq253 Length=26518 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || || |||| ||| | ||| ||| || || ||||| |||||||| Sbjct 7838 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAG 7779 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || ||||| ||||| ||||||||||| || | ||||| || || Sbjct 7778 AGGGTACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 7719 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || |||||||| || | | | || || |||| |||||||| Sbjct 7718 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 7659 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || ||||| ||||| | ||||| |||||||||||||| Sbjct 7658 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 7612 >seq5784 Length=6787 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA-CAGCTGACGGTCGTC 34236 || |||| ||| | |||| |||||| || |||||||||||||| || || ||| | || Sbjct 531 AGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTG-CGGCCATC 589 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||||| || || ||||| | || ||||| || || | | ||||| || Sbjct 590 TTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATC 649 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||||| || | || | || ||||| | ||||| || || | || ||||| Sbjct 650 TTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGT 709 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || || ||||| || ||||| |||||||| Sbjct 710 TTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 742 >seq2842 Length=19016 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA-CAGCTGACGGTCGTC 34236 || |||| ||| | |||| |||||| || |||||||||||||| || || ||| | || Sbjct 532 AGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTG-CGGCCATC 590 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||||| || || ||||| | || ||||| || || | | ||||| || Sbjct 591 TTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATC 650 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||||| || | || | || ||||| | ||||| || || | || ||||| Sbjct 651 TTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGT 710 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || || ||||| || ||||| |||||||| Sbjct 711 TTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323047835930720