Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq253 109 4e-19 seq4232 105 5e-18 seq5784 96.9 3e-15 seq2842 96.9 3e-15 >seq253 Length=26518 Score = 109 bits (120), Expect = 4e-19 Identities = 170/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 18084 TTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 || |||||||| | || || || ||||| || |||| ||| || || ||||| ||||| Sbjct 7852 TTCTCTTTTTGGCA-CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGG 7794 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||| ||||||| | || | |||||||||||| || || || | ||||||||| Sbjct 7793 ATGTTATAGTCGGAGAGGGTACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTT 7734 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| ||||| | | | | | | Sbjct 7733 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAG 7674 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || || ||| || | ||| || |||| ||||| || ||||| ||||| || ||| Sbjct 7673 TCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGC 7614 Query 18324 AT 18325 || Sbjct 7613 AT 7612 >seq4232 Length=1601 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| |||||| || ||||||||||| || |||||||||| || || | || Sbjct 267 AAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTC 208 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||||||||| ||| |||| || | ||| || ||| || | |||||||| || Sbjct 207 TTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 148 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||||||| | ||| |||||| | ||| ||||| ||| ||| | Sbjct 147 TTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGT 88 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | || || || || |||||||| Sbjct 87 CTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| |||||| || ||||||||||| ||||||||||||| || || | || Sbjct 495 AAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTC 436 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||||||||| ||| |||| || | ||| || || || | |||||||| || Sbjct 435 TTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTC 376 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||||||| | ||| |||||| | ||| ||||| ||| ||| | Sbjct 375 TTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGT 316 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | || || || || |||||||| Sbjct 315 CTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||||| || ||||||||||| |||||||| || | || || | || Sbjct 723 AAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCGTC 664 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||||||||| ||| |||| || | ||| || || || | |||||||| || Sbjct 663 TTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTC 604 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||||||| | ||| |||||| | ||| ||||| ||| ||| | Sbjct 603 TTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGT 544 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | || || || || |||||||| Sbjct 543 CTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 >seq5784 Length=6787 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| |||||| || ||||||||||||||||||||||||| Sbjct 516 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAT 575 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||| || || ||| | || | | ||| ||||| || Sbjct 576 AAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGA 635 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||||| ||| || || | | | || ||| | || | Sbjct 636 ATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACT 695 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| || || | || ||||||||||| |||||| Sbjct 696 TCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATT 743 >seq2842 Length=19016 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| |||||| || ||||||||||||||||||||||||| Sbjct 517 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAT 576 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||| || || ||| | || | | ||| ||||| || Sbjct 577 AAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGA 636 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||||| ||| || || | | | || ||| | || | Sbjct 637 ATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACT 696 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| || || | || ||||||||||| |||||| Sbjct 697 TCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATT 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379315627084065