Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq23 192 5e-44 seq4232 150 2e-31 seq5784 98.7 9e-16 seq2842 98.7 9e-16 seq2055 96.9 3e-15 >seq23 Length=21893 Score = 192 bits (212), Expect = 5e-44 Identities = 620/952 (65%), Gaps = 23/952 (2%) Strand=Plus/Plus Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 || ||| || ||||| || |||||||| || || ||||| ||||| |||||||| || || Sbjct 4456 GAGGGCAATGGAGGCTAGGTTGCATACAGCAACTTCGTCCTTGGAGGTGTACTCAACGAT 4515 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 ||| || ||||| || | || || || || | || ||||| ||| | || Sbjct 4516 TTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCGTT 4575 Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| || |||||||||||||| || || || || |||| ||| || || | ||| || Sbjct 4576 ACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATAGC 4635 Query 23197 TCGCCACATAGTCTGAGC-GTGAACACGTCGCACGTA---CCTGCCTTCTTCCTCGTACT 23252 ||| | ||| || |||| | || | | ||| | | || ||||||| Sbjct 4636 GTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTT-TCGTACT 4694 Query 23253 TTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC- 23311 || |||| | | | || || | |||| || ||| || || || || | || ||| Sbjct 4695 TTAGGTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTT-CATGA 4753 Query 23312 GGACACATGAGACTCCACATTGAGTCATTTTC---AACGCGTCTCATAAAAAGATCCGGT 23368 || || | | | | || | | | ||||| |||||| | ||| ||||| || || Sbjct 4754 GGGCAGA--ATAATGACCAGTC-GCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGA 4810 Query 23369 ATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC 23428 ||||| || ||||||||| || |||||||| || ||||| ||| || ||| || Sbjct 4811 ATCCAAAGGCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTCTC 4870 Query 23429 AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC 23488 || | ||||| || || | ||| | |||||| || || || |||| ||| || ||||| Sbjct 4871 AAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGCCT 4930 Query 23489 GGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATC 23548 || | || |||||||| ||||||||||| || || || ||||| | ||| ||||| Sbjct 4931 GGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCATT 4990 Query 23549 GGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACG 23608 || |||| |||||||| | ||| || || | || || |||| || | Sbjct 4991 GGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCGGATA 5050 Query 23609 TTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGA 23668 ||||| | | || || || || || | ||||| || || | || || || | | Sbjct 5051 TTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGGAGATA 5110 Query 23669 GTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATT 23728 || || || || || ||||| ||| |||| | | | ||||||||| | | Sbjct 5111 GTATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAGAAACAGG-----AGC 5165 Query 23729 TGCGCTTTGGGCG--TAGCGGCCGA---GAACAGTGTCGGGCTGGCGTGCGTAAAGTATC 23783 | ||| ||||| ||| | || ||| || || || ||| || ||||| | | Sbjct 5166 TTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGC 5225 Query 23784 CATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGA 23843 | ||||| || | ||| || | |||||||| | | || || || || ||||| | Sbjct 5226 GTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGGATACCAA 5285 Query 23844 TGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACA 23903 | ||||||||| | | |||||||||||| || | | || | || ||||| | Sbjct 5286 TACTGACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACTTTGAGAA 5345 Query 23904 GATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955 | || || | || | ||||| || ||||| |||| ||| | ||| || || Sbjct 5346 GGTAAGATCTTTCGAGGGTTTTGAAACCAAAGTAGTTATAATCAAAATCGCG 5397 Score = 113 bits (124), Expect = 4e-20 Identities = 286/429 (67%), Gaps = 7/429 (2%) Strand=Plus/Plus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 |||| || || || || || || | ||||| |||| || ||||||||| || ||| || Sbjct 3765 GGTTAACTACCTGGAATTCTCCAG-CAAGAACGCGACGAGTGTAAATGTTTGAGGTGTAC 3823 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 || || || |||| ||| |||| || || | || || || || ||||| || || Sbjct 3824 GGCTCAAAGCATTCGTTGAAGCCCAAAATTTGGGATGTGGAGGCTGTAGGCATGGGAGCG 3883 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT-TTTACTCTTGAGCATCGACCAGTC 22629 | ||| || |||||||| | ||||| ||| || ||| | | ||| | |||||| Sbjct 3884 AGCAGGAGGGAGTTTCTGACGCCGTATTTTTTGATGTTTTCACG-GAGTGTGTCCCAGTC 3942 Query 22630 CCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689 ||||| ||||| || || ||||| ||||||||| ||||||| || |||| | Sbjct 3943 CCACAAGTCGGAAGGAGTGACATT---CCACATATCAAATTGCAATTTACCCTGACTGAC 3999 Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTC 22749 || || |||||||| ||| || | |||| | |||| |||||| || || Sbjct 4000 TGGACTACCTTCGTAGGTTGGATAGTGGCCATCAGCCTTAGCAATTTCGCATGAAGCTTC 4059 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCT 22809 | || ||| ||| || || |||||||| |||||| | | ||| | | Sbjct 4060 AAGAGCAGCGTGATAAATTGTTTCGAAGATGAGCTTGTTGAGAGTGCGGGCACCTTCAGA 4119 Query 22810 TTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGAT 22869 |||| | || | || | ||||| ||| ||||| || | || || ||||| | |||||| Sbjct 4120 TTCGAAAGGTAGGCGAAGCATCAAGAAAGCGTCAGCTAAGCCTTGGACGCCAAGACCGAT 4179 Query 22870 CGGTCGGTT 22878 || ||||| Sbjct 4180 TGGGCGGTT 4188 >seq4232 Length=1601 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| |||||||| || || ||| | || || ||| | ||| Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| |||| || ||||||||||| | || || |||||| Sbjct 571 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 630 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || |||||||| | |||||| ||| || ||||| ||| Sbjct 631 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAAC 690 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||||||||| ||||||||| |||| ||| | || || || ||| Sbjct 691 ATCCAAAAAGAATCTACTCTTCATTTGGTGCTTCGTCTTAGAGGTGGT 738 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| |||||||| || || ||| | || || ||| | ||| Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| |||| || ||||||||||| | || || |||||| Sbjct 343 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 402 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || |||||||| | |||||| ||| || ||| || ||| Sbjct 403 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAC 462 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| |||||||| |||| ||| | || || || |||| Sbjct 463 ATCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGGTA 511 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| |||||||| || || ||| | || || ||| | ||| Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| |||| || ||||||||||| | || || |||||| Sbjct 115 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAG 174 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || |||||||| | |||||| ||| || ||| || || Sbjct 175 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAA 234 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| |||||||| |||| ||| | || || || |||| Sbjct 235 ATCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGGTA 283 >seq5784 Length=6787 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||||||||| ||||| ||||| || ||| |||| || ||| | || Sbjct 742 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCT 683 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || ||||| | ||| || |||||||| | || || || ||| Sbjct 682 GATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 623 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || || || || || | ||||| || | ||| || ||| Sbjct 622 CAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAAC 563 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| |||||||| |||| || Sbjct 562 ATTCAAAAAGAATCTACTCTTCACTTGGTTCT 531 >seq2842 Length=19016 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||||||||| ||||| ||||| || ||| |||| || ||| | || Sbjct 743 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCT 684 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || ||||| | ||| || |||||||| | || || || ||| Sbjct 683 GATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 624 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || || || || || | ||||| || | ||| || ||| Sbjct 623 CAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAAC 564 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| |||||||| |||| || Sbjct 563 ATTCAAAAAGAATCTACTCTTCACTTGGTTCT 532 >seq2055 Length=5446 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 31186 ATCA-AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 |||| || ||||||||||| || || ||||| |||||||| || |||||| | || |||| Sbjct 145 ATCACAAAATGCAAATTTTTGTCAAAACTCTTACAGGCAAGACCATCACCCTTGAGGTTG 86 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 || | ||||||| | | || | || || || | ||| ||||||||||| | || | Sbjct 85 AATCTTCCGACACTATTGACAACGTTAAGCAAAAAATTCAAGACAAGGAAGGAATCCCAC 26 Query 31305 CCGACCAGCAGCGTCTAATATTCGC 31329 | |||||||| ||||| || || || Sbjct 25 CAGACCAGCAACGTCTCATCTTTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445732204145040