Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2855 241 2e-58 seq23 129 7e-25 >seq2855 Length=12074 Score = 241 bits (266), Expect = 2e-58 Identities = 605/912 (66%), Gaps = 12/912 (1%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||||||||| || | || || ||||| || || ||||| || |||| || || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCA-ATTCAGAAA 33408 ||||||||||| || || ||||| || | ||| ||| || || | | || ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACA-AAA 5038 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 ||| | || || || ||||| || || ||| | | | |||||||||||| | Sbjct 5039 GCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAA 5098 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || || | | |||| | ||||||||||| |||| || || | | | || Sbjct 5099 GAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAA 5158 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 | | | ||||||||| ||| | | | | ||| |||| | || ||| Sbjct 5159 TGGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGA 5218 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 ||||| ||| ||||| || ||||||| || | |||||| || || || || ||||||| Sbjct 5219 AATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCA 5278 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 | |||||||||||||| ||||| || |||| ||||| || || ||||| || |||| Sbjct 5279 TAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTT 5338 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACT 33765 |||| || ||| ||| | ||| || ||| | | || ||||| ||||| | Sbjct 5339 CTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAGTCATCAATCCATT 5398 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | ||||| | ||||| || |||| || || || ||| || |||||| | | Sbjct 5399 CAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAGA 5458 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 ||| | ||||| | ||||||| | || || || || | | | |||||||| | Sbjct 5459 AGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTGT 5518 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | || |||||||| || || || ||||| ||||| | || || | || || |||| Sbjct 5519 GGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACTT 5578 Query 33946 CTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAA 34003 | |||| ||| ||| | | | ||||| || || || |||||||| || || || || Sbjct 5579 CGGTACCAAA--GTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAGAA 5636 Query 34004 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG--TTTATTCCAATCATTG 34061 || | | | ||| || ||||| |||||| ||||| | | |||| | ||| Sbjct 5637 GGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGTGTTG 5696 Query 34062 A-TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 | | || | ||| | ||| |||||||| || ||||| || || || || ||||| || Sbjct 5697 AGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTTGTA 5756 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 34180 ||| | ||| || || || ||| |||||||| | ||||| ||||||||||| ||| Sbjct 5757 CATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATTGGGTTT 5816 Query 34181 AAGGATAGGTTC 34192 ||| | ||| || Sbjct 5817 AAGAAGAGGCTC 5828 >seq23 Length=21893 Score = 129 bits (142), Expect = 7e-25 Identities = 565/882 (64%), Gaps = 23/882 (3%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 || |||||||| || || | || || ||||| | |||||||| ||| || | Sbjct 4514 ATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCG 4573 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 |||||||| || || || || ||| |||||||||||||||| ||||| || |||| || Sbjct 4574 TTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATA 4633 Query 63117 GCTTTCCAGACGACTCGAGCCTTTAT----TATAGATTTGTATCTCCTTTCTCTTTCGTA 63172 || | ||||| | || | || | || | || | | | ||||||| Sbjct 4634 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGT-TTTCGTA 4692 Query 63173 ---TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTC 63229 ||| ||| | || | |||||| || |||||||| | | | | |||| ||| Sbjct 4693 CTTTAG-GTAGAGC-TCAT-CGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTTC 4749 Query 63230 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63289 || || || | || ||||| || |||| ||| || || ||| || || ||||| Sbjct 4750 ATGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGG 4809 Query 63290 AATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63348 ||||||||| | || || || || | | | || ||| || || || ||| ||| Sbjct 4810 AATCCAAAGGCCGTAGAACAAG-TCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTC 4868 Query 63349 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63408 | | | | || | | ||| ||||||||||| ||||| | || ||||| | | | Sbjct 4869 TCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGC 4928 Query 63409 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63468 | || |||||||| || || ||||| | ||||| |||||| | || | ||| | || Sbjct 4929 CTGGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCA 4988 Query 63469 TTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAA 63528 |||||| || ||||| || |||| || || || | || ||| ||| | || || | Sbjct 4989 TTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCGGA 5048 Query 63529 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63588 |||| || || || ||||| || || ||| || ||| || || | | Sbjct 5049 TATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGGAGA 5108 Query 63589 ACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63648 || ||||| || ||||| || ||||| ||| | || | |||||| || Sbjct 5109 TAGTATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAGAAACAG---GAGC 5165 Query 63649 TTTGGTGA---CGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63705 || | ||| ||| ||||||| | || || | ||||||||| || || ||||| | Sbjct 5166 TTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGC 5225 Query 63706 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC-- 63763 || || | || | ||| || | || || || | | ||| ||| || || Sbjct 5226 GTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGGATACCAA 5285 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 |||| ||| ||||| | | || ||||||||||||| ||||| | | ||| | Sbjct 5286 TACT--GACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACTTTGAG 5343 Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865 | ||| ||| |||| | ||||| |||||||| ||||| || Sbjct 5344 AAGGTAAGATCTTTCGAGGGTTTTGAAACCAAAGTAGTTATA 5385 Score = 91.5 bits (100), Expect = 2e-13 Identities = 334/520 (64%), Gaps = 11/520 (2%) Strand=Plus/Plus Query 62027 TATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATA 62086 || ||||| | ||| | ||||||| || | | ||| || || || || | || || Sbjct 3409 TACTTTATTATGGTCGATAGTGAATTTGATAGCATCGGCAGCAGGCTTGGTTCTGAGGTA 3468 Query 62087 GTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA 62146 |||||| || || || | || |||| || ||||| ||||| || ||||| Sbjct 3469 GTACATGCCTGTCTTCAATCCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGTTTTTG 3528 Query 62147 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62206 ||| | || | | || || ||||| | ||||| |||||||||||| | ||||| | Sbjct 3529 GTAATTTGGGTTGTCCATGTGAATATTGAGGGATTGGCTTTGATCGATGTAAGCTCCGCG 3588 Query 62207 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCG 62266 |||||||| | | |||||| | |||||| |||||| ||| |||||| || | | | Sbjct 3589 GTCTGCAGAAAGATCTATGATAGACTTTTGCTTAATTTCATAAACAGTTTTGTAGAGTTG 3648 Query 62267 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTACCATAATCCT 62323 || | || ||||| | | | | | | || || |||||| | | || || Sbjct 3649 TTTCAAGTCATCTGGGATTTGGGGAAGTGCTTGGATAGATCCATTGTGAGCGATTAT--- 3705 Query 62324 ATTCTTGA----TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62379 || |||| | |||||| ||| || | | |||| | | | | | Sbjct 3706 -TTGTTGACGGGTGTCATCAGACCACAAACCGCGTTTTACTAAATCACGCAATAACCAAG 3764 Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 |||||||||| ||||||||||||| | || | ||||||||||| || ||| |||| Sbjct 3765 GGTTAACTACCTGGAATTCTCCAGCAAGAACGCGACGAGTGTAAATGTTTGAGGTGTACG 3824 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 | || | | || || ||||||||||| | || || || || ||||| || || | Sbjct 3825 GCTCAAAGCATTCGTTGAAGCCCAAAATTTGGGATGTGGAGGCTGTAGGCATGGGAGCGA 3884 Query 62500 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62539 || | ||||| | |||||| || |||| || || Sbjct 3885 GCAGGAGGGAGTTTCTGACGCCGTATTTTTTGATGTTTTC 3924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629769285117360