Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq23 82.4 7e-11 >seq23 Length=21893 Score = 82.4 bits (90), Expect = 7e-11 Identities = 282/433 (65%), Gaps = 10/433 (2%) Strand=Plus/Plus Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATA 38075 ||||| ||| || | ||||| | ||| || || ||| || || || || | || Sbjct 4787 ACGCGGCGCATGAAAAGGTCAGGAATCCA-AAGGCCGTAGAACAAGTCACGGGCGCGATT 4845 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135 |||||| || || ||| ||||| ||| ||| ||| || || || |||| |||||||| Sbjct 4846 TTCTTCTTTACCGTGATTTTTTCTCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGG 4905 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 ||| | |||||| | | || ||||| | ||| | || || |||| | |||| | | Sbjct 4906 TTCAAGATAAATGGCGAAGGCGCCTGGACGTTTGTTGCCGCCTTGATCGACGTATCGAGC 4965 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 || | || ||| | | ||| || || || || || || | ||||| | || | Sbjct 4966 GGTTGTGTTGAATACTTGGAGCATTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGC 5025 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTT 38315 || || | || | || || ||||| || | || |||||||| ||| ||| Sbjct 5026 AATGTAGGAGCCAGTTGCGCGGATATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTT 5085 Query 38316 TGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 || ||| ||| || || | |||||| | |||||||| ||| |||||| | || Sbjct 5086 GGAAATTTTAGCACACTGGGAGATAGTATCATAAATACCTTCGATAGAGTCATCTTGCAT 5145 Query 38376 TGGTAGTATAAAACAACTAGACATT---TGA-GGCAATGGAGTTCCGGCGTTAAATAATG 38431 || ||| | ||||| || || ||| ||| || |||||| | ||| || | | Sbjct 5146 TGTTAGCAAGAAACA---GGAGCTTAGCTGAGGGCGAT-TAGTTCCAGAGTTGAAAAGGG 5201 Query 38432 TAGGAGATGCATG 38444 ||||||| ||||| Sbjct 5202 TAGGAGAGGCATG 5214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468488858291280